Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001853-TA|BGIBMGA001853-PA|IPR005294|ATPase, F1 complex,
alpha subunit, IPR000793|ATPase, F1/V1/A1 complex, alpha/beta subunit,
C-terminal, IPR004100|ATPase, F1/V1/A1 complex, alpha/beta subunit,
N-terminal, IPR000194|ATPase, F1/V1/A1 complex, alpha/beta subunit,
nucleotide-binding
         (553 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    25   1.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   5.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   5.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   7.3  

>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 114 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN 154
           +++  N K ++ GD+V++    + V   +QI+  +V  LG+
Sbjct: 9   LMLLANHKNVQVGDLVQKIAQKLQVLFQDQIVDEMVTVLGD 49


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 529 QITPESDASLKKIVTDFLAT 548
           ++TP  DAS K+I T F +T
Sbjct: 108 RLTPSKDASSKRIXTAFTST 127


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 336 PGDVFYLHSRLLERAAKMSDKMG 358
           PG  +Y +  +L++ A+ S K+G
Sbjct: 414 PGAAYYQNENMLQKNAEYSGKVG 436


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 336 PGDVFYLHSRLLERAAKMSDKMG 358
           PG  +Y +  +L++ A+ S K+G
Sbjct: 362 PGAAYYQNENMLQKNAEYSGKVG 384


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 85  LKNIQAEEMVEFSSGLKGMALNLEPD 110
           +KN     +++F+ GLK + +++  D
Sbjct: 575 IKNFNIPSILQFNDGLKNLEIHVTKD 600


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,552
Number of Sequences: 317
Number of extensions: 4037
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 553
length of database: 114,650
effective HSP length: 60
effective length of query: 493
effective length of database: 95,630
effective search space: 47145590
effective search space used: 47145590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)