Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001853-TA|BGIBMGA001853-PA|IPR005294|ATPase, F1 complex,
alpha subunit, IPR000793|ATPase, F1/V1/A1 complex, alpha/beta subunit,
C-terminal, IPR004100|ATPase, F1/V1/A1 complex, alpha/beta subunit,
N-terminal, IPR000194|ATPase, F1/V1/A1 complex, alpha/beta subunit,
nucleotide-binding
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 700 0.0
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 116 3e-26
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 116 3e-26
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 115 9e-26
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 106 3e-23
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 106 3e-23
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 106 3e-23
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 94 2e-19
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 79 1e-14
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 62 7e-10
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 34 0.21
At1g50730.1 68414.m05705 expressed protein 31 1.5
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 6.1
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 29 6.1
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr... 29 8.0
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 29 8.0
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 700 bits (1731), Expect = 0.0
Identities = 345/498 (69%), Positives = 407/498 (81%), Gaps = 4/498 (0%)
Query: 45 KAAEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMA 104
+AAE++ + E RI ++E GRV+S+GDGIA+VYGL IQA EMV F++G+KGMA
Sbjct: 276 RAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMA 335
Query: 105 LNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDT 164
LNLE +NVG+VVFG D IKEGD+VKRTG+IVDVP G+ +LGRVVDA+G PIDGKG +
Sbjct: 336 LNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSD 395
Query: 165 KSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTI 224
+ RV +KAPGI+ R SV EPMQTG+KAVDSLVPIGRGQREL+IGDRQTGKT +AIDTI
Sbjct: 396 HEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTI 455
Query: 225 INQQRFN-KGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPL 283
+NQ++ N + E + +YC+YVAIGQKRSTV Q+++ L +A A+ Y+I+V+ATASD APL
Sbjct: 456 LNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATASDPAPL 515
Query: 284 QYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLH 343
Q+LAPYSGCAMGE+FRDNG HALIIYDDLSKQAVAYRQMSLLLRRPPGREA+PGDVFYLH
Sbjct: 516 QFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLH 575
Query: 344 SRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 403
SRLLERAAK SD+ G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIR
Sbjct: 576 SRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIR 635
Query: 404 PAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGM 463
PAINVGLSVSRVGSAAQ KAMKQV GS KLELAQYREVAAFAQFGSDLDAATQ LLNRG
Sbjct: 636 PAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGA 695
Query: 464 RLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTS-HQGLLS 522
RLTE+ KQ QY P+ IE+Q+ +IY V G D++ +I+ +EK +K Q L
Sbjct: 696 RLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAIPNSVKPELLQALKG 755
Query: 523 TIAKDGQITPESDASLKK 540
+ + ++ P DA LK+
Sbjct: 756 GLTNERKMEP--DAFLKE 771
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 116 bits (280), Expect = 3e-26
Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 16/336 (4%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 115
Query: 160 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAL 219
PI ++ + + + R E +QTGI +D + I RGQ+ + +
Sbjct: 116 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 175
Query: 220 AIDTIINQ----QRFNKGED-----EKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINY 269
A I Q +R K ++ E ++ A+G T AQ KR + G++
Sbjct: 176 AAQ-ICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMET-AQFFKRDFEENGSMER 233
Query: 270 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 328
+ A+D + + P E+ + GKH L+I D+S A A R++S
Sbjct: 234 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 293
Query: 329 PPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITD 388
PGR YPG ++ + + ERA ++ + GS+T +P++ D++ P IT+
Sbjct: 294 VPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTPDLTGYITE 351
Query: 389 GQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 424
GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 352 GQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 387
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 116 bits (280), Expect = 3e-26
Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 16/336 (4%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 115
Query: 160 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAL 219
PI ++ + + + R E +QTGI +D + I RGQ+ + +
Sbjct: 116 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 175
Query: 220 AIDTIINQ----QRFNKGED-----EKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINY 269
A I Q +R K ++ E ++ A+G T AQ KR + G++
Sbjct: 176 AAQ-ICRQAGLVKRLEKSDNLLEHQEDDNFAIVFAAMGVNMET-AQFFKRDFEENGSMER 233
Query: 270 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 328
+ A+D + + P E+ + GKH L+I D+S A A R++S
Sbjct: 234 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 293
Query: 329 PPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITD 388
PGR YPG ++ + + ERA ++ + GS+T +P++ D++ P IT+
Sbjct: 294 VPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTPDLTGYITE 351
Query: 389 GQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 424
GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 352 GQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 387
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 115 bits (276), Expect = 9e-26
Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 16/336 (4%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 160 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAL 219
PI ++ + + + R E +QTGI +D + I RGQ+ + +
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 174
Query: 220 AIDTIINQ----QRFNKG----EDEKKKLYCI-YVAIGQKRSTVAQIVKR-LTDAGAINY 269
A I Q +R K ED + + I + A+G T AQ KR + G++
Sbjct: 175 AAQ-ICRQAGLVKRLEKTVDLLEDHGEDNFAIVFAAMGVNMET-AQFFKRDFEENGSMER 232
Query: 270 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 328
+ A+D + + P E+ + GKH L+I D+S A A R++S
Sbjct: 233 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 292
Query: 329 PPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITD 388
PGR YPG ++ + + ERA ++ + GS+T +P++ D++ P IT+
Sbjct: 293 VPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTPDLTGYITE 350
Query: 389 GQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 424
GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 351 GQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 386
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 106 bits (255), Expect = 3e-23
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 21/311 (6%)
Query: 114 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 173
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 174 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 233
AP ++ + +E + TGIK VD L P RG + + G GKT L ++ I N + + G
Sbjct: 195 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 254
Query: 234 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAI--------NYTIIVSATASDAAPLQY 285
+ ++ +G++ + + + ++G I + +V ++ +
Sbjct: 255 -------FSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARA 307
Query: 286 LAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHS 344
+G + E+FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 308 RVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367
Query: 345 RLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 404
L ER GS+T++ I A D++ P + D L ++ GI P
Sbjct: 368 ALQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 423
Query: 405 AINVGLSVSRV 415
A++ S SR+
Sbjct: 424 AVDPLDSTSRM 434
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 106 bits (255), Expect = 3e-23
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 21/311 (6%)
Query: 114 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 173
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 197
Query: 174 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 233
AP ++ + +E + TGIK VD L P RG + + G GKT L ++ I N + + G
Sbjct: 198 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 257
Query: 234 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAI--------NYTIIVSATASDAAPLQY 285
+ ++ +G++ + + + ++G I + +V ++ +
Sbjct: 258 -------FSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARA 310
Query: 286 LAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHS 344
+G + E+FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 311 RVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 370
Query: 345 RLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 404
L ER GS+T++ I A D++ P + D L ++ GI P
Sbjct: 371 ALQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 426
Query: 405 AINVGLSVSRV 415
A++ S SR+
Sbjct: 427 AVDPLDSTSRM 437
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 106 bits (255), Expect = 3e-23
Identities = 81/311 (26%), Positives = 143/311 (45%), Gaps = 21/311 (6%)
Query: 114 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 173
+ + G + L++ G V TGA + VPVG LGR+++ LG PID +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 174 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 233
AP ++ + +E + TGIK VD L P RG + + G GKT L ++ I N + + G
Sbjct: 195 APALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 254
Query: 234 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAI--------NYTIIVSATASDAAPLQY 285
+ ++ +G++ + + + ++G I + +V ++ +
Sbjct: 255 -------FSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARA 307
Query: 286 LAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHS 344
+G + E+FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 308 RVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367
Query: 345 RLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRP 404
L ER GS+T++ I A D++ P + D L ++ GI P
Sbjct: 368 ALQERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYP 423
Query: 405 AINVGLSVSRV 415
A++ S SR+
Sbjct: 424 AVDPLDSTSRM 434
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 94.3 bits (224), Expect = 2e-19
Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 19/337 (5%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 160 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIG--------- 210
PI ++ + + + R E +QTGI +D + I RGQ+ +
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 174
Query: 211 DRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINY 269
Q + A + + + + + + ++ A+G T AQ KR + G++
Sbjct: 175 AAQICRQAGLVKRLEKTENLIQEDHGEDNFAIVFAAMGVNMET-AQFFKRDFEENGSMER 233
Query: 270 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 328
+ A+D + + P E+ + GKH L+I D+S A A R R
Sbjct: 234 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALR---FCCSR 290
Query: 329 PPGREAYPGDVFYLH-SRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISIT 387
+ + V+Y + + ERA ++ + GS+T +P++ D++ P IT
Sbjct: 291 RSSWKTWISGVYYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTPDLTGYIT 348
Query: 388 DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 424
+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 349 EGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 385
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 78.6 bits (185), Expect = 1e-14
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 13/254 (5%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 114
Query: 160 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIG--------- 210
PI ++ + + + R E +QTGI +D + I RGQ+ +
Sbjct: 115 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 174
Query: 211 DRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINY 269
Q + A + + + + + + ++ A+G T AQ KR + G++
Sbjct: 175 AAQICRQAGLVKRLEKTENLIQEDHGEDNFAIVFAAMGVNMET-AQFFKRDFEENGSMER 233
Query: 270 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 328
+ A+D + + P E+ + GKH L+I D+S A A R++S
Sbjct: 234 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 293
Query: 329 PPGREAYPGDVFYL 342
PGR YPG + +
Sbjct: 294 VPGRRGYPGYIIQI 307
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 62.5 bits (145), Expect = 7e-10
Identities = 60/258 (23%), Positives = 117/258 (45%), Gaps = 23/258 (8%)
Query: 177 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 236
+ +++ P+ TG + +D+L P G I G GKT ++ Q +K +
Sbjct: 219 VASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS-------QALSKYSNS 271
Query: 237 KKKLYCIYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYL 286
+YV G++ + +A+++ +LT + + T +V+ T++ +
Sbjct: 272 DA---VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328
Query: 287 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 346
+ Y+G + E+FRD G + ++ D S+ A A R++S L P YP + +
Sbjct: 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASF 388
Query: 347 LERAAKMSDKMG---GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 403
ERA K+ G GS+T + + GD S + + +SI L+ +L +
Sbjct: 389 YERAGKVKCLGGPERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHF 448
Query: 404 PAINVGLSVSRVGSAAQT 421
P++N +S S+ +A ++
Sbjct: 449 PSVNWLISYSKYSTALES 466
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 942
Score = 34.3 bits (75), Expect = 0.21
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 201 GRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKR 260
G+ Q ++ +G+R+ + LA D ++ + +EK+KL + +A GQ+ S A V+
Sbjct: 855 GQEQHDVKVGEREVREGLLAADASERVKKVLESSEEKQKLEKMKIAYGQQHSQGASPVRN 914
Query: 261 L 261
L
Sbjct: 915 L 915
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 31.5 bits (68), Expect = 1.5
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 452 DAATQQLLNR---GMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLDKLDPSKITAFE 506
D + Q+LN G RL+E Q ++ I+E Q A Y + +L +D +
Sbjct: 448 DCSFSQVLNYRLLGNRLSEGKSQEGFLSSLIDEVIQAASQYQSLYDYLRIMDAYVDLMLQ 507
Query: 507 KEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFTQSQ 553
+ H+ ++S +A+D ++ E ASL+ I+ L+ F Q
Sbjct: 508 NKMENHLDALLDDIVS-LARDKFLSEEEQASLQSIILKLLSHFENLQ 553
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 115 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 149
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 29.5 bits (63), Expect = 6.1
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 404 PAINVGLSVSRVGSAAQTKAMKQVAG---SMKLELAQYR-EVAAFAQFGSDLDAATQQLL 459
PA+ + S R+ A + K +KQV G +L LA R ++AA Q D+++ + +L
Sbjct: 46 PALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGIL 105
Query: 460 NRGMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLD 495
+ E+ + + + E + A+ +GHLD
Sbjct: 106 SGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLD 143
>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 934
Score = 29.1 bits (62), Expect = 8.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 384 ISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA-AQTKAMKQVAGSMKLELAQ----Y 438
I I++ I EL + P ++V LS + G T ++Q++GSM + Y
Sbjct: 129 IVISETYIIETAELVFLASSPTVSVCLSNATTGQPFISTLELRQLSGSMYGSMLSEDRFY 188
Query: 439 REVAAFAQFGSDLDAATQ 456
VAA FG++ +A+ +
Sbjct: 189 LSVAARINFGAESEASVR 206
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 208 IIGDRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTV 254
I GD+ G+ ++ + +++Q NKG++EK Y + + G+ + ++
Sbjct: 85 IAGDKPVGEVSVPVKELLDQ---NKGDEEKTVTYAVRLPNGKAKGSL 128
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,802
Number of Sequences: 28952
Number of extensions: 464123
Number of successful extensions: 1089
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 17
length of query: 553
length of database: 12,070,560
effective HSP length: 85
effective length of query: 468
effective length of database: 9,609,640
effective search space: 4497311520
effective search space used: 4497311520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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