Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001853-TA|BGIBMGA001853-PA|IPR005294|ATPase, F1 complex,
alpha subunit, IPR000793|ATPase, F1/V1/A1 complex, alpha/beta subunit,
C-terminal, IPR004100|ATPase, F1/V1/A1 complex, alpha/beta subunit,
N-terminal, IPR000194|ATPase, F1/V1/A1 complex, alpha/beta subunit,
nucleotide-binding
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 118 2e-26
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 112 8e-25
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 60 3e-09
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 60 6e-09
09_04_0131 + 14917239-14918510,14918803-14918895 29 7.3
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 29 9.6
01_05_0397 + 21753095-21753814 29 9.6
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 118 bits (283), Expect = 2e-26
Identities = 90/336 (26%), Positives = 158/336 (47%), Gaps = 17/336 (5%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 97 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 156
Query: 160 GPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIG--------- 210
PI ++ + + + R E +QTGI +D + I RGQ+ +
Sbjct: 157 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 216
Query: 211 DRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINY 269
Q + A + ++ + GED+ + ++ A+G T AQ KR + G++
Sbjct: 217 AAQICRQAGLVKSLEKGKHAEGGEDDNFAI--VFAAMGVNMET-AQFFKRDFEENGSMER 273
Query: 270 TIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRR 328
+ A+D + + P E+ + GKH L+I D+S A A R++S
Sbjct: 274 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 333
Query: 329 PPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITD 388
PGR YPG ++ + + ERA ++ + GS+T +P++ D++ P IT+
Sbjct: 334 VPGRRGYPGYMYTDLATIYERAGRIEGR--SGSITQIPILTMPNDDITHPTPDLTGYITE 391
Query: 389 GQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 424
GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 392 GQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 427
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 112 bits (269), Expect = 8e-25
Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 25/345 (7%)
Query: 101 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGK 159
+G L ++ + V VF G + + V+ TG ++ PV +LGRV + G PID
Sbjct: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNG 116
Query: 160 GPIDTK-----SRMRVGIKAPG--IIP--RVSVREPMQTGIKAVDSLVPIGRGQRELIIG 210
PI + S +G G I P R E +QTGI +D + I RGQ+ +
Sbjct: 117 PPILPEAYLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 176
Query: 211 DRQTGKTALAIDTIINQ----QRFNKGED-----EKKKLYCIYVAIGQKRSTVAQIVKR- 260
+A I Q +R K ++ E + ++ A+G T AQ KR
Sbjct: 177 AAGLPHNEIAAQ-ICRQAGLVKRLEKSDNILESSEDENFAIVFAAMGVNMET-AQFFKRD 234
Query: 261 LTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAY 319
+ G++ + A+D + + P E+ + GKH L+I D+S A A
Sbjct: 235 FEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 294
Query: 320 RQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYI 379
R++S PGR YPG ++ + + ERA ++ + GS+T +P++ D++
Sbjct: 295 REVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPT 352
Query: 380 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 424
P IT+GQI+++ +L + I P INV S+SR+ +A + M
Sbjct: 353 PDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 397
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 60.5 bits (140), Expect = 3e-09
Identities = 59/255 (23%), Positives = 115/255 (45%), Gaps = 23/255 (9%)
Query: 180 RVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDEKKK 239
+++ P+ TG + +D+L P G I G GKT ++ Q +K + +
Sbjct: 239 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS-------QALSKYSNSEA- 290
Query: 240 LYCIYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYLAPY 289
+YV G++ + +A+++ +LT + + T +V+ T++ + + Y
Sbjct: 291 --VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIY 348
Query: 290 SGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 349
+G + E+FRD G + ++ D S+ A A R++S L P YP + + ER
Sbjct: 349 TGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYER 408
Query: 350 AAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 406
A K + GS+T + + GD S + + +SI L+ +L + P++
Sbjct: 409 AGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSV 468
Query: 407 NVGLSVSRVGSAAQT 421
N +S S+ A ++
Sbjct: 469 NWLISYSKYSKALES 483
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 59.7 bits (138), Expect = 6e-09
Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 177 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 236
++ +++ P+ TG + +D+L P G I G GKT ++ Q +K +
Sbjct: 222 VMEKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS-------QALSKYSNS 274
Query: 237 KKKLYCIYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYL 286
+ +YV G++ + +A+++ +LT + + T +V+ T++ +
Sbjct: 275 QA---VVYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREA 331
Query: 287 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 346
+ Y+G + E++RD G + ++ D S+ A A R++S L P YP + +
Sbjct: 332 SIYTGITIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASF 391
Query: 347 LERAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIR 403
ERA K + GS+T + + GD S + + +SI L+ +L +
Sbjct: 392 YERAGKVRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHF 451
Query: 404 PAINVGLSVSR 414
P++N +S S+
Sbjct: 452 PSVNWLISYSK 462
>09_04_0131 + 14917239-14918510,14918803-14918895
Length = 454
Score = 29.5 bits (63), Expect = 7.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 286 LAPYSGCAMGEFFRDNGKHALIIYDDLSK 314
L Y+ F RDN KHAL+ Y DL K
Sbjct: 75 LYTYNALMSSHFKRDNIKHALVFYYDLLK 103
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 29.1 bits (62), Expect = 9.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 160 GPIDTKSRMR-VGIKAPGI-------IPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGD 211
GP D + RM+ VGI + I V+EPM G + + +G G L +GD
Sbjct: 45 GPYDVRVRMKAVGICGSDVHYLREMRIAHFVVKEPMVIGHECAGVIEEVGSGVTHLAVGD 104
Query: 212 R 212
R
Sbjct: 105 R 105
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.1 bits (62), Expect = 9.6
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 242 CIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 301
C V I K +T A V +D ++ V+A D P+ A + AM +F D+
Sbjct: 84 CSTVVI-TKAATAAHSVFTFSDQSSMP----VAAAQDDGRPVG--AYWCSAAMSAYF-DD 135
Query: 302 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 332
KH YD ++KQ V LR PP R
Sbjct: 136 KKH----YDQVTKQVVVAAADRCFLRTPPRR 162
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,260,542
Number of Sequences: 37544
Number of extensions: 591143
Number of successful extensions: 1370
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 7
length of query: 553
length of database: 14,793,348
effective HSP length: 86
effective length of query: 467
effective length of database: 11,564,564
effective search space: 5400651388
effective search space used: 5400651388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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