Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001853-TA|BGIBMGA001853-PA|IPR005294|ATPase, F1 complex,
alpha subunit, IPR000793|ATPase, F1/V1/A1 complex, alpha/beta subunit,
C-terminal, IPR004100|ATPase, F1/V1/A1 complex, alpha/beta subunit,
N-terminal, IPR000194|ATPase, F1/V1/A1 complex, alpha/beta subunit,
nucleotide-binding
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 595 e-170
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 364 e-100
SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07) 175 8e-44
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 1e-16
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 82 1e-15
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 66 9e-11
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 33 0.45
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.6
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 29 9.7
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 9.7
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
SB_17274| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 595 bits (1469), Expect = e-170
Identities = 297/337 (88%), Positives = 312/337 (92%), Gaps = 12/337 (3%)
Query: 103 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPI 162
MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPIDGKGP
Sbjct: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPT 60
Query: 163 DTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAID 222
+R RVG+KAPGIIPR SV+EPM TGIKAVDSLVPIGRGQRELIIGDRQTGKTA+AID
Sbjct: 61 GG-TRARVGVKAPGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAID 119
Query: 223 TIINQQRFNKGEDE-----------KKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTI 271
TIINQ+RFN G DE +KKLYCIYVAIGQKRSTVAQ+VK++TDA A+ YTI
Sbjct: 120 TIINQKRFNDGVDEIDILNTRGLFLEKKLYCIYVAIGQKRSTVAQLVKKMTDADAMKYTI 179
Query: 272 IVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 331
IVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG
Sbjct: 180 IVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 239
Query: 332 REAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 391
REAYPGDVFYLHSRLLERAAKM+D GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI
Sbjct: 240 REAYPGDVFYLHSRLLERAAKMNDSNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 299
Query: 392 FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 428
FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQ +
Sbjct: 300 FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQTS 336
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 364 bits (895), Expect = e-100
Identities = 179/312 (57%), Positives = 234/312 (75%), Gaps = 11/312 (3%)
Query: 250 KRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 309
K+ST+A +V++L + GA+ TI+V+A+AS++A LQ++APY+GC MGE+FRD G+ ALI+Y
Sbjct: 1 KQSTIANVVRKLEENGALANTIVVAASASESAALQFIAPYAGCTMGEYFRDRGEDALIVY 60
Query: 310 DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKM------GG---- 359
DDLSKQAVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLERA+++S++ G
Sbjct: 61 DDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERASRVSEEYVEKFTNGAVTGK 120
Query: 360 -GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 418
GSLTALP+IETQAGDVSA++PTNVISITDGQIFLE+ +F GIRPA+N G+SVSRVG A
Sbjct: 121 TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAMFNSGIRPAVNAGISVSRVGGA 180
Query: 419 AQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMA 478
AQTK +K+++G ++ LAQYRE+AAFAQF SDLD AT++ L G R+TEL+KQ QY PM+
Sbjct: 181 AQTKIIKKLSGGIRTALAQYRELAAFAQFASDLDEATRKQLEHGQRVTELMKQKQYAPMS 240
Query: 479 IEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASL 538
I + +Y RG L ++ +K+ AFE+ + H LL+ I + G + D L
Sbjct: 241 IADMSVSLYAAERGFLVDIEVAKVGAFEQALIAYFNRDHAALLAKINEKGDFNDDIDGQL 300
Query: 539 KKIVTDFLATFT 550
K + F AT T
Sbjct: 301 KAGIEKFKATQT 312
>SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)
Length = 99
Score = 175 bits (426), Expect = 8e-44
Identities = 84/97 (86%), Positives = 91/97 (93%)
Query: 332 REAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 391
REAYPGDVFYLHSRLLERAAK+SD +G GSLTALP+IETQAGDVSAYIPTNVISITDGQI
Sbjct: 2 REAYPGDVFYLHSRLLERAAKLSDALGAGSLTALPIIETQAGDVSAYIPTNVISITDGQI 61
Query: 392 FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 428
FL++ELFY GIRPAINVGLSVSRVGSAAQ MK++A
Sbjct: 62 FLDSELFYNGIRPAINVGLSVSRVGSAAQVAMMKKLA 98
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 85.4 bits (202), Expect = 1e-16
Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 5/199 (2%)
Query: 229 RFNKG--EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYL 286
+FNKG +D + ++ A+G T + + G++ + A+D + +
Sbjct: 132 KFNKGVMDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERII 191
Query: 287 APYSGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 345
P EF KH L+I D+S A A R++S PGR +PG ++ +
Sbjct: 192 TPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLAT 251
Query: 346 LLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 405
+ ERA ++ + GS+T +P++ D++ IP IT+GQI+++ +L + I P
Sbjct: 252 VYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP 309
Query: 406 INVGLSVSRVGSAAQTKAM 424
INV S+SR+ +A + M
Sbjct: 310 INVLPSLSRLMKSAIGEGM 328
Score = 30.7 bits (66), Expect = 3.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 102 GMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKG 160
G L + V VF G + + + TG I+ PV E +LGRV + G ID +G
Sbjct: 51 GEVLEVSGSKAVVQVFEGTSGIDAKHTTCEFTGDILRTPVSEDMLGRVFNGSGKAID-RG 109
Query: 161 P 161
P
Sbjct: 110 P 110
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 82.2 bits (194), Expect = 1e-15
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 114 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 173
+ + G + LI+ G TG + +PVG + LGR+++ +G PID +GP++T R + +
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAE 182
Query: 174 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKG 233
AP + + +E ++TGIK VD L P +G + + G GKT L ++ I N + + G
Sbjct: 183 APEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 242
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 65.7 bits (153), Expect = 9e-11
Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 28/253 (11%)
Query: 177 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 236
+ +++ P+ TG + +D+L P +G I G GKT ++ +F+ +
Sbjct: 75 VTDKMAANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSL----SKFSNSD-- 128
Query: 237 KKKLYCIYVAIGQKRSTVAQIVKRLTDA---------GAINYTIIVSATASDAAPLQYLA 287
IYV G++ + ++++++ + + T +V+ T++ + +
Sbjct: 129 ----VIIYVGCGERGNEMSEVLRDFPELTVEINGQVESIMKRTALVANTSNMPVAAREAS 184
Query: 288 PYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 346
Y+G + E+FRD G H ++ D S+ A A R++S L P YP YL +RL
Sbjct: 185 IYTGITLSEYFRDMGHHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 241
Query: 347 --LERAAKMS---DKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 401
ERA ++S + GS+T + + GD S + + ++I L+ +L +
Sbjct: 242 SFYERAGRVSCLGNPQREGSVTIVGAVSPPGGDFSDPVTSATLNIVQVFWGLDKKLAQRK 301
Query: 402 IRPAINVGLSVSR 414
P+IN +S S+
Sbjct: 302 HFPSINWLISYSK 314
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 33.5 bits (73), Expect = 0.45
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 189 TGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIG 248
TGIK +D + P +G + + G GKT L + I N + + G ++ +G
Sbjct: 5 TGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGG-------LSVFAGVG 57
Query: 249 QKRSTVAQIVKRLTDAGAINY 269
++ +++ + ++G I Y
Sbjct: 58 ERTREGNDLLREMLESGIIKY 78
>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1922
Score = 29.9 bits (64), Expect = 5.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 505 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 549
F ++ T+ S+QG + I+ G PESD++ +IV + AT+
Sbjct: 952 FARKLTEEEVKSYQGPVHYISHHGLARPESDSTPLRIVFNMSATY 996
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 29.5 bits (63), Expect = 7.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 292 CAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 351
CA G + D H L D +Y ++S + P + G V L S LL R A
Sbjct: 567 CAPGSYSEDESYHELSRGDQSPTDGKSYHELSRGDQSP--TDGKSGLVGMLSSALLSRGA 624
Query: 352 KMSDKMG 358
+ +K+G
Sbjct: 625 NVKEKIG 631
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 29.5 bits (63), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 298 FRDNGKHALIIYDDLSKQAVAYRQM 322
+R G HA I+YD L +VA R+M
Sbjct: 349 YRKGGDHAYILYDSLDAASVAAREM 373
>SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 29.1 bits (62), Expect = 9.7
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 346 LLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 405
L + K++ K+ G +L V++ VS YI N + G + L A
Sbjct: 695 LADSFLKLTTKLVGMALPIDSVVDLHNDLVSDYIINNELRTLCGSLSLRCGRLMALAAGA 754
Query: 406 INVGLSVSRVGSA-AQTKAMKQVAGS 430
+N+ V+ G+A A T+ ++ AG+
Sbjct: 755 LNIARHVNTAGTASADTRCQQEPAGT 780
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 29.1 bits (62), Expect = 9.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 461 RGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGL 520
RG +TE++++G+ VP I + ++ +R H D + I F ++ Q I Q +
Sbjct: 161 RGQMITEMMREGKLVPKEI--TIGLLQDAMREHKD-MPGFLIDGFPRDIDQGITFEEQHI 217
Query: 521 L 521
L
Sbjct: 218 L 218
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 29.1 bits (62), Expect = 9.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 408 VGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAAT 455
+G+S R + + K+V S + E+A+ EV AFA S+ D AT
Sbjct: 1770 LGISEEREQETEELEEHKEVVESEETEMAEEEEVPAFADIPSE-DTAT 1816
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 505 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 549
F ++ T+ S+QG + I+ G PESD++ +IV + AT+
Sbjct: 620 FARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRIVFNTSATY 664
>SB_17274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 505 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 549
F ++ T+ S+QG + I+ G PESD++ +IV + AT+
Sbjct: 3 FARKLTEEEVKSYQGPVHYISHHGVARPESDSTPLRIVFNTSATY 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,966
Number of Sequences: 59808
Number of extensions: 621754
Number of successful extensions: 1524
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 18
length of query: 553
length of database: 16,821,457
effective HSP length: 86
effective length of query: 467
effective length of database: 11,677,969
effective search space: 5453611523
effective search space used: 5453611523
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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