Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001852-TA|BGIBMGA001852-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding, IPR014021|Helicase superfamily 1 and 2 ATP-binding,
IPR001650|Helicase, C-terminal, IPR014001|DEAD-like helicases,
N-terminal, IPR000330|SNF2-related
(3376 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 31 0.10
AF452568-1|AAL57830.1| 243|Tribolium castaneum homeodomain tran... 28 1.3
AF321227-5|AAK16425.1| 292|Tribolium castaneum Zen2 protein. 28 1.3
AY600514-1|AAT11862.1| 242|Tribolium castaneum iroquois-like pr... 27 2.2
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 26 3.8
Z69735-1|CAA93623.1| 162|Tribolium castaneum initiation factor ... 25 8.9
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 25 8.9
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 25 8.9
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 25 8.9
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 31.5 bits (68), Expect = 0.10
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 681 IETENQISNNDEICMLPLNSNNTNIDTSKSDTTKILLESEKSVNNVTNESCVPNSDEAE 739
IE E ++ ND + L +N NNT ++ T K L + + V + + +P +D+ +
Sbjct: 187 IEAEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQ 245
>AF452568-1|AAL57830.1| 243|Tribolium castaneum homeodomain
transcription factor Zen2 protein.
Length = 243
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 216 NRPSKDKIFETNQTTTSEADSTNNIEMSAECTNSSNDLKMKICPKAKEKIFPSHS---YK 272
NR K K E N+ T + S N MS + T+S+N K C + FP S K
Sbjct: 135 NRRMKFKKEEKNKVVTPKT-SPNEASMSPQSTSSNNSASPKACQFLYNQ-FPGSSQVVVK 192
Query: 273 DLTTQLSNQ 281
D T Q +
Sbjct: 193 DETCQYDTE 201
>AF321227-5|AAK16425.1| 292|Tribolium castaneum Zen2 protein.
Length = 292
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 216 NRPSKDKIFETNQTTTSEADSTNNIEMSAECTNSSNDLKMKICPKAKEKIFPSHS---YK 272
NR K K E N+ T + S N MS + T+S+N K C + FP S K
Sbjct: 155 NRRMKFKKEEKNKVVTPKT-SPNEASMSPQSTSSNNSASPKACQFLYNQ-FPGSSQVVVK 212
Query: 273 DLTTQLSNQ 281
D T Q +
Sbjct: 213 DETCQYDTE 221
>AY600514-1|AAT11862.1| 242|Tribolium castaneum iroquois-like protein
protein.
Length = 242
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 1031 KSFLLFKLAKHNLTQMEEDLATQYNTFLKEQNLSWVREEEKEITASTKVSDDSDCEIVEE 1090
+ +L + K LTQ+ A KE ++W + + + VSD D E EE
Sbjct: 116 EKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTDDDDDALVSDSDDREKDEE 175
Query: 1091 IVQPTKEGKDHLNSE 1105
+ + + SE
Sbjct: 176 DKRDDTDMHGRIKSE 190
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 594 GRPKKNYEKKTTSRSPNVDKNQSQEINDGLQIVQSPT-VPKTSTTYSENKEPSNKSETQV 652
G P ++ +T + N K S + L + SP P TSTT P++ + +
Sbjct: 120 GAPPRSTPPLSTPSNSNATK--SSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTS 177
Query: 653 TESQVITLNDEDENIQS 669
+ + T N+ ++ QS
Sbjct: 178 STEKAGTNNNNSKSSQS 194
>Z69735-1|CAA93623.1| 162|Tribolium castaneum initiation factor
5-like protein protein.
Length = 162
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 862 RIGDTNECLESSINQFHDDNDNNE 885
++ D NE LE+S+N+ + D++E
Sbjct: 93 QVDDQNESLEASVNENSKNGDDDE 116
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/94 (19%), Positives = 37/94 (39%)
Query: 664 DENIQSYISENEQKNCFIETENQISNNDEICMLPLNSNNTNIDTSKSDTTKILLESEKSV 723
D+ + +S+ + C + + ++DEI + N N S ++ +
Sbjct: 89 DKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSNGA 148
Query: 724 NNVTNESCVPNSDEAEQPLVNDTSGRPVRRVIRK 757
++V + S E + DTS P R+ +K
Sbjct: 149 SSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKK 182
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/94 (19%), Positives = 37/94 (39%)
Query: 664 DENIQSYISENEQKNCFIETENQISNNDEICMLPLNSNNTNIDTSKSDTTKILLESEKSV 723
D+ + +S+ + C + + ++DEI + N N S ++ +
Sbjct: 37 DKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSNGA 96
Query: 724 NNVTNESCVPNSDEAEQPLVNDTSGRPVRRVIRK 757
++V + S E + DTS P R+ +K
Sbjct: 97 SSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKK 130
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/94 (19%), Positives = 37/94 (39%)
Query: 664 DENIQSYISENEQKNCFIETENQISNNDEICMLPLNSNNTNIDTSKSDTTKILLESEKSV 723
D+ + +S+ + C + + ++DEI + N N S ++ +
Sbjct: 220 DKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGNNNNTPSATNNNTNFNNNSNGA 279
Query: 724 NNVTNESCVPNSDEAEQPLVNDTSGRPVRRVIRK 757
++V + S E + DTS P R+ +K
Sbjct: 280 SSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKK 313
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.311 0.127 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,366
Number of Sequences: 317
Number of extensions: 29308
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 21
length of query: 3376
length of database: 114,650
effective HSP length: 70
effective length of query: 3306
effective length of database: 92,460
effective search space: 305672760
effective search space used: 305672760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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