GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001851-TA|BGIBMGA001851-PA|undefined
         (558 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    30   0.044
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    30   0.044
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    26   0.71 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   3.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   6.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   6.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   6.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   6.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   8.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   8.8  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 0.044
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 423 HSDVLLTSLCTVLGIEPTTNVMILVKSYNDLERDIKEAKEGIEDGFRVREEKLREIEQSM 482
           H+ ++  SLC   G      +  L+ SYN LER +    E +E  F +  +++ ++++  
Sbjct: 42  HTYIIYESLC---GRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKN 98

Query: 483 RPLVDYIW 490
           + L    W
Sbjct: 99  QILTTNAW 106


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 0.044
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 423 HSDVLLTSLCTVLGIEPTTNVMILVKSYNDLERDIKEAKEGIEDGFRVREEKLREIEQSM 482
           H+ ++  SLC   G      +  L+ SYN LER +    E +E  F +  +++ ++++  
Sbjct: 42  HTYIIYESLC---GRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKN 98

Query: 483 RPLVDYIW 490
           + L    W
Sbjct: 99  QILTTNAW 106


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 26.2 bits (55), Expect = 0.71
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 204 YFTFGPFDQYKQLQELYLSHFDLYVSKKFDLKQNESKNYDNEVLSQAKNMERRLSEAL 261
           Y  F   DQ++   ++    +D Y S ++D    E+KN  N++L+   +     SEAL
Sbjct: 109 YPPFWDEDQHRLYAQIKTGSYD-YPSPEWDTVTPEAKNLINQMLTVNPSKRITASEAL 165


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 235 KQNESKNYDNEVLSQAKNMERRLSEALSEYIDSKAEL 271
           + ++  N   EVL +AK ++  +   L E I  K+++
Sbjct: 428 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDI 464


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 114 QKEKFNLLAKHERIVKDLIKQKEGINEQLNLEITKLNAAQQQICD 158
           QK++  +LAK  +   D   +K  I  +  L+I +L    ++I D
Sbjct: 413 QKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKRLFGKDRKIMD 457


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 235 KQNESKNYDNEVLSQAKNMERRLSEALSEYIDSKAEL 271
           + ++  N   EVL +AK ++  +   L E I  K+++
Sbjct: 134 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDI 170


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 446 LVKSYNDLERDIKEAKEGIEDGFRVREEKLREIEQSMRPLVDYIW 490
           L+ +YN LER +    E +   F +   ++ ++++  + L+  +W
Sbjct: 31  LLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLITNLW 75


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 6/26 (23%), Positives = 18/26 (69%)

Query: 25  NQSFEWMLNNSEFASALEWMYYHLDY 50
           N ++++  NN+ + +  + +YY+++Y
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 6/26 (23%), Positives = 18/26 (69%)

Query: 25  NQSFEWMLNNSEFASALEWMYYHLDY 50
           N ++++  NN+ + +  + +YY+++Y
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 6/26 (23%), Positives = 18/26 (69%)

Query: 25  NQSFEWMLNNSEFASALEWMYYHLDY 50
           N ++++  NN+ + +  + +YY+++Y
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 6/26 (23%), Positives = 18/26 (69%)

Query: 25  NQSFEWMLNNSEFASALEWMYYHLDY 50
           N ++++  NN+ + +  + +YY+++Y
Sbjct: 93  NNNYKYNYNNNNYNNNCKKLYYNINY 118


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 243 DNEVLSQAKNMERRLSEALSEYIDSKAELCGEQAKLELVANYNNPHSNQLSMNILEAQTA 302
           +N  L++ +  +      L+E    K     ++AK++  +   NP + QL    L   + 
Sbjct: 41  ENRYLTERRRQQLSRDLGLNE-AQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYNHST 99

Query: 303 VQLLEQEE 310
           V L ++EE
Sbjct: 100 VPLTKEEE 107


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 410 ICREQASCEQKLEHSDVLLTSLCTVLGIEPTTN 442
           +CR  A  ++   H D  L      L  EP  N
Sbjct: 25  LCRRDAEIQELRSHLDKFLQCASLKLAFEPRRN 57


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,041
Number of Sequences: 429
Number of extensions: 6893
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 13
length of query: 558
length of database: 140,377
effective HSP length: 61
effective length of query: 497
effective length of database: 114,208
effective search space: 56761376
effective search space used: 56761376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)