Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001850-TA|BGIBMGA001850-PA|IPR000326|Phosphoesterase,
PA-phosphatase related, IPR008934|Acid phosphatase/vanadium-dependent
haloperoxidase
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    65   1e-11
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   7.4  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 90  LYGFMMNLCIVEVMKGIVGNPRPVFFALCQPDTAKTCNGTDFVSTFECTSSYSRWYRMDS 149
           LY  M+    V ++K  VG PRP F A CQP   ++   T  V    C+  +S     D 
Sbjct: 97  LYSTMVCGLCVSLLKNAVGRPRPDFLARCQP--FESTPKTGLVDVLSCSVPWSDKVLQDG 154

Query: 150 YRSFPSGHTSLSVYCGFFLAWYL--QKRAF-NWSYRSELVVPXXXXXXXXXXXXXXXTRI 206
           +RSFPSGHTS S     FLA +L  Q + F N +   ++VVP               +R 
Sbjct: 155 FRSFPSGHTSFSFAGLGFLAIFLAGQLKMFRNKTSSWKVVVP---LVPLSIASWIGLSRS 211

Query: 207 TDRMHHWWDVLIGSAIGLITLLYTVKELLRSL 238
            D  HH  D+ +G+  G        ++L   L
Sbjct: 212 QDYRHHKEDIAVGALFGFAIAYVVYRQLFPPL 243


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 128 GTDFVSTFECTSSYSRWYRMDSYRSF 153
           GT   +  E  + Y+ WY  DS+RSF
Sbjct: 207 GTIESTRAEVDNFYNFWYNFDSWRSF 232


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.140    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,963
Number of Sequences: 5004
Number of extensions: 36737
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 2
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)