Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10,
serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase,
class II, IPR002320|Threonyl-tRNA synthetase, class IIa,
IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS,
IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA
synthetase, class II (G, H, P and S)
         (703 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   2.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   8.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 457 FGFTFQLKLSTRPEKYLGDLETWNQ--AEKALEDSLNKFG 494
           FGF +  K  T  E+  G++  W+Q  A + L D+   FG
Sbjct: 202 FGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRDNAEAFG 241


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 457 FGFTFQLKLSTRPEKYLGDLETWNQ--AEKALEDSLNKFG 494
           FGF +  K  T  E+  G++  W+Q  A + L D+   FG
Sbjct: 202 FGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRDNAEAFG 241


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 446 CLEFLKCVYSTFGFTFQLKLS 466
           C++ LK +  T  FT+ L LS
Sbjct: 463 CMDLLKELSKTINFTYSLALS 483


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,202
Number of Sequences: 429
Number of extensions: 9453
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 3
length of query: 703
length of database: 140,377
effective HSP length: 63
effective length of query: 640
effective length of database: 113,350
effective search space: 72544000
effective search space used: 72544000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)