Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10,
serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase,
class II, IPR002320|Threonyl-tRNA synthetase, class IIa,
IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS,
IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA
synthetase, class II (G, H, P and S)
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0069 - 11880841-11880936,11881150-11881221,11881263-118813... 416 e-116
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 396 e-110
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 34 0.44
10_01_0094 - 1142271-1142570,1142658-1143458 31 4.1
08_02_0470 - 17551368-17552330,17552420-17552920 31 4.1
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 30 7.2
11_06_0321 - 22341267-22342565 30 7.2
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883... 29 9.6
07_03_1181 + 24606407-24606480,24607060-24608752 29 9.6
>08_02_0069 -
11880841-11880936,11881150-11881221,11881263-11881343,
11881471-11881542,11882549-11882770,11882849-11882941,
11883509-11883601,11884546-11884632,11884958-11884990,
11885091-11885185,11886590-11886674,11886778-11886864,
11887757-11887846,11887929-11888057,11888668-11888757,
11888849-11888908,11889074-11889311,11889852-11890054
Length = 641
Score = 416 bits (1025), Expect = e-116
Identities = 211/384 (54%), Positives = 262/384 (68%), Gaps = 39/384 (10%)
Query: 338 EVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEKETFALKPMNCPGHCLMFDNRTRSWREL 397
+V++PN+YN +LW+TSGH A+Y ENMF F++EK+ F LKPMNCPGHCLMF++R RS+REL
Sbjct: 270 KVLSPNIYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFEHRVRSYREL 329
Query: 398 PLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPQQIEAEIVGCLEFLKCVYSTF 457
PLR+ADFGVLHRNELSGALTGLTRVRRFQQDDAHIFC QI+ E+ L+F+ VY F
Sbjct: 330 PLRMADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRESQIKDEVKAVLDFINYVYEIF 389
Query: 458 GFTFQLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNPGDGAFYGPKIDITIQD 517
GF ++L+LSTRPEKYLGD+ETWN+AE+ L ++LN+FGKPWQ+N GDGAFYGPKIDI + D
Sbjct: 390 GFKYELELSTRPEKYLGDIETWNKAEQQLTEALNEFGKPWQINEGDGAFYGPKIDIGVFD 449
Query: 518 ALRRSHQCATIQLDFQLPERFNLTYSVVKFWCCVSFGCSETGDKKRPVIIHRAVLGSVER 577
AL+R QCAT+QLDFQLP RF LTYS + +RPV+IHRA+LGSVER
Sbjct: 450 ALKRKFQCATLQLDFQLPLRFKLTYS-----------AEDEAKLERPVMIHRAILGSVER 498
Query: 578 MVAILSESYAGKWPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLN 637
M AIL E Y GKWPLWLSPRQ V + +YA QV ++ AGF +D + T+
Sbjct: 499 MFAILLEHYNGKWPLWLSPRQAIVCSISSNSVEYAKQVRARIHEAGFHVAID-ETDRTIQ 557
Query: 638 KK------------------------VRNAQLAQ---FNYILVVGEREKNSGTVNVRTRD 670
KK + N + AQ FNYILVVG +E +G V+VR RD
Sbjct: 558 KKGLFHFGFAHAARKFYYFSNLVYTVLNNVREAQLAQFNYILVVGAQEAETGQVSVRVRD 617
Query: 671 NKVHGEMSVEALIEHLNNLVREKK 694
+S++ +I V K
Sbjct: 618 KAELATVSIDDIITRFKEEVAAYK 641
Score = 229 bits (559), Expect = 8e-60
Identities = 122/283 (43%), Positives = 170/283 (60%), Gaps = 33/283 (11%)
Query: 2 KEKKKKTEDTNAVSEMNPWPE--YI----QKRITLWDKYKAQYTEQIASKPDISVVVTLP 55
KE K K + + S N P+ Y+ QKRI +++ +A+ + + + +TLP
Sbjct: 13 KEAKGKATTSASASAPNVEPDVAYLEAVTQKRIRQFEEIQAKQALERLNIGGEPIRITLP 72
Query: 56 DGKTVEAKAWKTTPYDVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTD 115
DG + K W +TP D+AK IS GLA++ +IA+VN LWD+ RPLEGDC+L+L ++D+ +
Sbjct: 73 DGAVKDGKKWISTPMDIAKEISSGLANSCLIAQVNGTLWDMTRPLEGDCELKLFKFDSNE 132
Query: 116 AQAVFWHSSAHMLGEAMERVYGGCLCYGPPIE--EGFYYDMYYPEKGISSTDFNVLEGLI 173
+ FWHSSAH+LGE++ER YG LC GP EGFYYD YY + ++ T F +++
Sbjct: 133 GRDTFWHSSAHILGESLERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLNETHFGIIDAQA 192
Query: 174 KKIAKEKQPFERLELTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHV 233
+K V I+NE + T TVYRCGPL+DLCRGPH+
Sbjct: 193 QKAV-------------------------AVEIINELPEDKTITVYRCGPLVDLCRGPHI 227
Query: 234 RHTGKVKALKVTKNSATYWEGKAEAESLQRVYGISFPEPKQLK 276
+T VKA K S++YW GKA+ ESLQRVYGISFP+ K+LK
Sbjct: 228 PNTSFVKAFACLKASSSYWRGKADRESLQRVYGISFPDSKRLK 270
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 396 bits (976), Expect = e-110
Identities = 221/597 (37%), Positives = 348/597 (58%), Gaps = 42/597 (7%)
Query: 125 AHMLGEAMERVYGGC-LCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPF 183
AH++ A+++++ + GP I+ GFYYD + + ++ D ++ + +I ++ P
Sbjct: 128 AHVMAMAVQKLFPNSKVTIGPWIDNGFYYD--FDMEPLTDKDLKRIKKEMDRIIRKNLPL 185
Query: 184 ERLELTKEQLLEMFDY--NPFKVRILNEKVQTPTTTVYRCGP-LIDLCRGPHVRHTGKV- 239
R E+++E+ + + P+K+ IL E ++ T+Y G DLC GPHV TGK+
Sbjct: 186 VREEVSREEAQKRIEALNEPYKLEIL-EGIKEDPITIYHIGEEWWDLCAGPHVESTGKID 244
Query: 240 -KALKVTKNSATYWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQE 298
+A+++ + YW G + LQR+YG ++ QLK + +EEA +RDHR++G + +
Sbjct: 245 RRAVELESVAGAYWRGDESNQMLQRIYGTAWETEDQLKAYIHFKEEAKRRDHRRLGLDLD 304
Query: 299 LFFFHELSPGSC-FFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWA 357
LF E + G F+ P+GA I + L + K+ + RG+ + TP++ A+LW+ SGH
Sbjct: 305 LFSIQEDAGGGLVFWHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHID 364
Query: 358 HYAENMFS-FDVEKETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGAL 416
Y ENM++ DVE E + L+PMNCP H L++ + S+R+ P+R+A+ G ++R ELSG+L
Sbjct: 365 FYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRYELSGSL 424
Query: 417 TGLTRVRRFQQ----------------DDAHIFCAPQQIEAEIVGCLEFLKCVYSTFGFT 460
GL RVR F Q DDAHIFC QI+ EI G L+ + + FGF
Sbjct: 425 HGLFRVRGFTQISLSTTTTSVSGLFVQDDAHIFCLEDQIKDEIRGVLDLTEQILGQFGFR 484
Query: 461 F-QLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNPGDGAFYGPKIDITIQDAL 519
+ ++ LSTRPEK +G + W +A AL+D+L G ++++ G GAFYGPKID+ I+DAL
Sbjct: 485 YYEINLSTRPEKSVGSDDIWEKATLALKDALEDKGWEYKVDEGGGAFYGPKIDLKIEDAL 544
Query: 520 RRSHQCATIQLDFQLPERFNLTYSVVKFWCCVSFGCSETGDKKRPVIIHRAVLGSVERMV 579
R QC+T+Q+DF LPERF++TY + +KKRP++IHRA+LGS+ER
Sbjct: 545 GRKWQCSTVQVDFNLPERFDITY------------VNSNSEKKRPIMIHRAILGSLERFF 592
Query: 580 AILSESYAGKWPLWLSPRQLRVVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLNKK 639
+L E YAG +PLWL+P Q R++PV Y +V +L + G +EV G+ L K
Sbjct: 593 GVLIEHYAGDFPLWLAPIQARILPVTDNELQYCNEVASELKSKGIRAEV--CHGERLPKL 650
Query: 640 VRNAQLAQFNYILVVGEREKNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLS 696
+RNA+ + + VVG +E + T+ +R+R + G M V+ + + K S
Sbjct: 651 IRNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFFRRIQLAIANKSSS 707
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 33.9 bits (74), Expect = 0.44
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 387 FDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAH-IFCAPQQIEAEIVG 445
F RS R+LPLR + + R E S T R R F + H F ++ + E++
Sbjct: 143 FSKWIRSHRDLPLRCNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKEEADEEVLQ 201
Query: 446 CLEFLKCVYSTF-GFTFQLKLSTRPEKYLGDLET 478
LE + +Y F + EK+ G L T
Sbjct: 202 ILELYRRIYEEFLAVPVSKGRKSEMEKFAGGLYT 235
>10_01_0094 - 1142271-1142570,1142658-1143458
Length = 366
Score = 30.7 bits (66), Expect = 4.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 383 HCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGL 419
HC F T W + LR+AD V+HRN + L+ L
Sbjct: 28 HCFAFIKSTALWAAIDLRIAD--VIHRNGGAATLSDL 62
>08_02_0470 - 17551368-17552330,17552420-17552920
Length = 487
Score = 30.7 bits (66), Expect = 4.1
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 184 ERLELTKEQ-LLEMFDYNPFKVRILNEKVQTPTTTVYRCGP-LIDLCRGPHVRHTGKVKA 241
+ +E T E +L F+Y L+ TP + VY G +++L G H K A
Sbjct: 352 DEVECTAEMPILGTFEY--MDPEYLSTGNLTPASDVYSFGVVMLELLTGKKAIHDEKHGA 409
Query: 242 LKVTKNSATY---WEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQ 297
+ T A+ E + L R G+ P P+QLK EV+ A + H + G+E+
Sbjct: 410 VVATSLVASVLPNMEAGDLMKELDRGPGLK-PTPRQLKATEVVARTAVRCVHSQ-GKER 466
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 29.9 bits (64), Expect = 7.2
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 396 ELPLRLADFGVLHRNEL--SGALT-GLTRVRRFQQDDAHIFCAPQQIEAEIVGCLEFLKC 452
+LP + + R E +GA T GL RV +F + + +FC P++ + + +
Sbjct: 357 DLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPEESDKCHEELITIEEE 416
Query: 453 VYSTFGFTFQ-LKLST----RPEKYLGDLETW 479
+Y++ G F+ L ++T P D+E W
Sbjct: 417 LYASLGLHFKTLDMATGDLGAPAYRKFDIEAW 448
>11_06_0321 - 22341267-22342565
Length = 432
Score = 29.9 bits (64), Expect = 7.2
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 60 VEAKAWKTTPYDVAKGISQGLADATIIARVNNELWDLD 97
+E W+ P D+A G++ G ++A VNNEL+ D
Sbjct: 305 LEKGTWRLIP-DMASGLNGGSGAPPLVAVVNNELYAAD 341
>12_02_0703 +
22282219-22282430,22286054-22287620,22287751-22288371,
22288434-22288484
Length = 816
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 659 KNSGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLSEDSEL 701
K+SG VN + DNK + + A + L+ + EK +S D++L
Sbjct: 635 KDSGNVNEQKDDNKKIVDRKLHAALLSLSAAIFEKLISNDTDL 677
>07_03_1181 + 24606407-24606480,24607060-24608752
Length = 588
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 661 SGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLSEDSELL 702
SG VNV RD+ + G+ IE+L + E K + D+++L
Sbjct: 480 SGIVNVYKRDDFLGGKRKPLKTIENLTTEIGEMKFNHDAQVL 521
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,344,924
Number of Sequences: 37544
Number of extensions: 921214
Number of successful extensions: 1866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 15
length of query: 703
length of database: 14,793,348
effective HSP length: 87
effective length of query: 616
effective length of database: 11,527,020
effective search space: 7100644320
effective search space used: 7100644320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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