Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10,
serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase,
class II, IPR002320|Threonyl-tRNA synthetase, class IIa,
IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS,
IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA
synthetase, class II (G, H, P and S)
(703 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 506 e-143
SB_10925| Best HMM Match : No HMM Matches (HMM E-Value=.) 261 1e-69
SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29) 248 2e-65
SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.8
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 31 2.4
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14) 31 2.4
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 30 5.5
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 29 9.7
SB_9929| Best HMM Match : MTS (HMM E-Value=3.5) 29 9.7
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07) 29 9.7
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 506 bits (1249), Expect = e-143
Identities = 235/340 (69%), Positives = 271/340 (79%), Gaps = 11/340 (3%)
Query: 361 ENMFSFDVEKETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLT 420
E+MFSF+VE E +ALKPMNCPGHCLMFD+R RSWRELPLR+ADFGVLHRNELSG L+GLT
Sbjct: 405 EHMFSFEVENERYALKPMNCPGHCLMFDHRPRSWRELPLRMADFGVLHRNELSGTLSGLT 464
Query: 421 RVRRFQQDDAHIFCAPQQIEAEIVGCLEFLKCVYSTFGFTFQLKLSTRPEKYLGDLETWN 480
RVRRFQQDDAHIFC QI EI+ CL+FLK VY FGFTF+L LSTRPEKYLG +E WN
Sbjct: 465 RVRRFQQDDAHIFCTADQIGQEIISCLDFLKHVYGVFGFTFKLNLSTRPEKYLGKIELWN 524
Query: 481 QAEKALEDSLNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNL 540
QAEK LE +LN FG+PW LNPGDGAFYGPKIDI IQDALRR HQCATIQLDFQLPERFNL
Sbjct: 525 QAEKELEAALNGFGQPWVLNPGDGAFYGPKIDIQIQDALRRYHQCATIQLDFQLPERFNL 584
Query: 541 TYSVVKFWCCVSFGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLR 600
TY E ++KRPVI+HRA+LGSVERM+AIL+ES+ GKWP WLSPRQ
Sbjct: 585 TYVT-----------GEGDERKRPVIVHRAILGSVERMIAILTESFGGKWPFWLSPRQAI 633
Query: 601 VVPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKN 660
V+P+GP +D+YA +V + AAG+ + D D G TLNKKVRNAQLAQ+N+I VVGE+E
Sbjct: 634 VIPIGPKYDEYAQKVMSDILAAGYHVDADLDHGTTLNKKVRNAQLAQYNFIFVVGEKEAT 693
Query: 661 SGTVNVRTRDNKVHGEMSVEALIEHLNNLVREKKLSEDSE 700
+GTVNVRTRDNKVHGE SVEA++ L E+ + + E
Sbjct: 694 TGTVNVRTRDNKVHGEFSVEAVLNKFATLTSERVRNSEEE 733
Score = 137 bits (332), Expect = 2e-32
Identities = 60/81 (74%), Positives = 69/81 (85%)
Query: 117 QAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKI 176
+AVFWHSSAH+LGEAMER YGGCLCYGPPIEEG+YYDM+ + +SS DF+ L+ L KKI
Sbjct: 290 RAVFWHSSAHVLGEAMERHYGGCLCYGPPIEEGYYYDMHLEGRQVSSNDFSSLDNLTKKI 349
Query: 177 AKEKQPFERLELTKEQLLEMF 197
KEKQPFERLE+ KE LLEMF
Sbjct: 350 TKEKQPFERLEMKKEDLLEMF 370
Score = 37.5 bits (83), Expect = 0.036
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 13 AVSEMNPWPEYIQKRITLWDKYKAQYTEQIASK 45
++S+++P P YIQ RI ++D+ KA+Y +IA +
Sbjct: 258 SLSQLDPPPSYIQSRIEMFDRLKAEYDAEIAGR 290
>SB_10925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 261 bits (640), Expect = 1e-69
Identities = 121/174 (69%), Positives = 138/174 (79%), Gaps = 11/174 (6%)
Query: 439 IEAEIVGCLEFLKCVYSTFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQ 498
I EI+ CL+FLK VY FGFTF+L LSTRPEKYLG +E WNQAEK LE +LN FG+PW
Sbjct: 1 IGQEIISCLDFLKHVYGVFGFTFKLNLSTRPEKYLGKIELWNQAEKELEAALNGFGQPWV 60
Query: 499 LNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWCCVSFGCSET 558
LNPGDGAFYGPKIDI IQDALRR HQCATIQLDFQLPERFNLTY E
Sbjct: 61 LNPGDGAFYGPKIDIQIQDALRRYHQCATIQLDFQLPERFNLTYVT-----------GEG 109
Query: 559 GDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFDDYA 612
++KRPVI+HRA+LGSVERM+AIL+ES+ GKWP WLSPRQ V+P+GP +D+YA
Sbjct: 110 DERKRPVIVHRAILGSVERMIAILTESFGGKWPFWLSPRQAIVIPIGPKYDEYA 163
>SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29)
Length = 314
Score = 248 bits (606), Expect = 2e-65
Identities = 125/314 (39%), Positives = 192/314 (61%), Gaps = 20/314 (6%)
Query: 378 MNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAPQ 437
MNCP HC +++ R S+++LP R A+FG ++R E SG L GLTRVR F QDDAHIFC P
Sbjct: 1 MNCPHHCEIYNARPWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCTPD 60
Query: 438 QIEAEIVGCLEFLKCVYSTFGF-TFQLKLSTR----PEKYLGDLETWNQAEKALEDSLNK 492
Q++ E ++ + V+ + GF F ++S R PEKY+G++E W +AE A+ +
Sbjct: 61 QLDQEFKNVIDLVLYVFGSLGFENFTAQVSVRDLEKPEKYIGNIENWEKAENAIISAAKD 120
Query: 493 FGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWCCVS 552
G + + G+ AFYGPK+D ++DAL RS Q TIQ+D+ LPERF LTY
Sbjct: 121 KGLNYVIESGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFELTYK--------- 171
Query: 553 FGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFDDYA 612
+ RPV+IHRA GS+ER +AIL E AG +P+WL P Q ++ + +++YA
Sbjct: 172 ---GSDNELHRPVMIHRAPFGSMERFIAILLEHTAGNFPIWLMPEQAIILSLSEKYENYA 228
Query: 613 VQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTR--D 670
+V L +++D + +T+ KK+R A+ ++ ++L++GE E+ +GT++VR D
Sbjct: 229 QKVFSLLENHEIRAQID-NRNETIGKKIREAETQKYPFMLIIGEDEEKNGTISVRRHGDD 287
Query: 671 NKVHGEMSVEALIE 684
K + M++EA +
Sbjct: 288 GKSNQTMTIEAFAD 301
>SB_33426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 31.9 bits (69), Expect = 1.8
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 252 WEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHR 291
W G+AEA +LQ+ Y IS P ++L + +++ + +R HR
Sbjct: 116 WPGRAEATALQKAYTISCPYCQRLFQAKIVL-SSHRRTHR 154
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 31.5 bits (68), Expect = 2.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 443 IVGCLEFLKCVYSTFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDSLNKFGKPWQLNPG 502
+V LE + +YS F F TR +Y G++E + L+DS+N+ KP N
Sbjct: 257 VVDSLESSESLYSLFELGFHF---TRTCQYQGEIEMGQKVLNELQDSVNQALKPKLTNTV 313
Query: 503 DGA 505
+G+
Sbjct: 314 NGS 316
>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 31.5 bits (68), Expect = 2.4
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 226 DLCRGPHVRHTGKVKALKVTKNSATYWEGKA-EAES-LQRVYGISFPEPKQLKEWEVIQE 283
D+ + H H G VK + +W G A E E+ + + Y S + KQ KE +I
Sbjct: 821 DMLQRKHEGHLGIVKCKQRGARGTLFWPGMAMEIENKVSKCYTCSLHQRKQAKE-PMIPH 879
Query: 284 EAAKRDHRKIGRE 296
E R KIG +
Sbjct: 880 EPPTRPWAKIGTD 892
>SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)
Length = 682
Score = 31.5 bits (68), Expect = 2.4
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 112 DNTDAQAVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMYY-------PEKGISST 164
D T ++ + S H + ER GC+C G + F Y + Y E GI +T
Sbjct: 60 DVTLSRYATYGPSIHCVTFFNERCNNGCICIGED-QANFIYTIEYASGYFSGDEDGI-TT 117
Query: 165 DFNVLEGLIKKIAKEKQPFERLELTKEQLLEMFD-YNPFKVRIL 207
+ E ++ + +K +++EL +E L+EM + P ++R+L
Sbjct: 118 EKTACEDRNQQESWKKPREKKIELQRENLVEMGENEQPHEIRVL 161
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 30.3 bits (65), Expect = 5.5
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 601 VVPVGPAFDDYAVQVNDKLFAAG---FMSEVDTDAGDTLNKKVRNAQLAQ-FNYILVVGE 656
V+ G AF D ++ D+L + FM +T+A D L + ++N +L Q F V E
Sbjct: 326 VIAGGAAFKDGRLKAEDQLLSVNNVSFMRLTNTEAIDGLRRAMQNTRLGQAFIETTVARE 385
Query: 657 REKNS--GTVNVRTRD 670
R+ + GTV VR+ +
Sbjct: 386 RDPQNDIGTV-VRSHE 400
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 29.5 bits (63), Expect = 9.7
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 173 IKKIAKEKQPF-ERLELTKEQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRG- 230
I ++ EK+ E LE K+++ M+D KV+ N K+ R ++ R
Sbjct: 381 IMELEAEKEGLKELLEAEKDKMKAMWDLETEKVKEQNNKLNCLRRDYERKFNSLEEARSD 440
Query: 231 -----PHVRHTGKVKALKVTKNSATYWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEA 285
++ LK+ ++S K E E ++ + K L E E+ +++A
Sbjct: 441 AMFQRQQFEKEKQLALLKIQESSTRLTNSKLEREKALQIAEGDLNKKKDLLELEIAEKKA 500
Query: 286 AKRDHRKIGREQ 297
+ RK +Q
Sbjct: 501 ELNEERKYFEDQ 512
>SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)
Length = 573
Score = 29.5 bits (63), Expect = 9.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 41 QIASKPDISVVVTLPDGKTVEAKAWKTTPYDVAKGISQ 78
Q + P I V+ DG+T + KA KT+P D A+ + Q
Sbjct: 421 QTIACPAIPQVIPFSDGETRKRKARKTSPLDDAEALLQ 458
>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
Length = 882
Score = 29.5 bits (63), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 476 LETWNQAEKALEDSLNKFGKPWQLNPGDGAFYG 508
L+ WNQA +ED +++ W NP + YG
Sbjct: 804 LKLWNQAR--IEDKMHQLEVEWHFNPPKASHYG 834
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,858,957
Number of Sequences: 59808
Number of extensions: 1074202
Number of successful extensions: 2121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2107
Number of HSP's gapped (non-prelim): 16
length of query: 703
length of database: 16,821,457
effective HSP length: 87
effective length of query: 616
effective length of database: 11,618,161
effective search space: 7156787176
effective search space used: 7156787176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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