GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10,
serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase,
class II, IPR002320|Threonyl-tRNA synthetase, class IIa,
IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS,
IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA
synthetase, class II (G, H, P and S)
         (703 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     25   6.8  
DQ230893-2|ABD94312.1|  525|Anopheles gambiae iduronate 2-sulfat...    25   9.0  

>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 283 EEAAKRDHRKIGREQELFFFHELSPGSCFFQPRGAHIYNTLVNFIKEQYRSRG 335
           +E+ K    K+  E+ L    E  PG+CFF  +  H       F+  +    G
Sbjct: 49  DESEKLYGGKVQEERVLKAKSESKPGACFFCGQPGHKKRDCKEFLNRESSGEG 101


>DQ230893-2|ABD94312.1|  525|Anopheles gambiae iduronate 2-sulfatase
           precursor protein.
          Length = 525

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 597 RQLRV-VPVGPAFDDYAVQVNDKLFAAGFMSEVDTDAGDTLNK 638
           RQL V  P GP  DD+ +++    +AA  ++ VD   G+ L +
Sbjct: 272 RQLNVSFPFGPVPDDFKLRIRQHYYAA--VTFVDELIGELLQE 312


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,169
Number of Sequences: 2123
Number of extensions: 31816
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 2
length of query: 703
length of database: 516,269
effective HSP length: 69
effective length of query: 634
effective length of database: 369,782
effective search space: 234441788
effective search space used: 234441788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)