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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10,
serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase,
class II, IPR002320|Threonyl-tRNA synthetase, class IIa,
IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS,
IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA
synthetase, class II (G, H, P and S)
         (703 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...   974   0.0  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...   974   0.0  
U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    38   0.024
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    38   0.024
Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical pr...    37   0.042
U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    31   2.8  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    30   6.4  
AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans hom...    30   6.4  
AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans hom...    30   6.4  

>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score =  974 bits (2411), Expect = 0.0
 Identities = 438/683 (64%), Positives = 543/683 (79%), Gaps = 13/683 (1%)

Query: 11  TNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 70
           + A ++M PWP +I++RI LWDK KA+Y  +IA+K    + +TLPDGK  E K W+TTP+
Sbjct: 2   SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 61

Query: 71  DVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGE 130
           ++A+ IS+GLA+A +IA+VN  +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 62  EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 121

Query: 131 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 190
           AMER  GG LCYGPPI+EGFYYDM++  + I   DF  ++ ++K   K+KQ FERLE+TK
Sbjct: 122 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 181

Query: 191 EQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSAT 250
           E LLEMF YN FKVRI+ EK+ TP TTVYRCGPLIDLCRGPHVRHTGKVKA+ +TKNS++
Sbjct: 182 EDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSS 241

Query: 251 YWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSC 310
           YWEGKA+AESLQR+YGISFP+ KQLKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS 
Sbjct: 242 YWEGKADAESLQRLYGISFPDSKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSA 301

Query: 311 FFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEK 370
           F+ P+GAHIYN LV+FI++QYR RGF EV+TPNMYN KLW+TSGHW HY+E+MF  +VEK
Sbjct: 302 FWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEK 361

Query: 371 ETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 430
           E F LKPMNCPGHCLMF +   ++ ELP R ADFGVLHRNE+SGALTGLTRVRRFQQDDA
Sbjct: 362 EEFGLKPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDA 421

Query: 431 HIFCAPQQIEAEIVGCLEFLKCVY-STFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDS 489
           HIFC   QI  EI  CL+FL+  Y   FGFTF+L LSTRPE +LG++ETW++AE  L ++
Sbjct: 422 HIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNA 481

Query: 490 LNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWC 549
           LN  G+ W LNPGDGAFYGPKIDITIQDAL+R+ QCATIQLDFQLP +F+L+Y       
Sbjct: 482 LNASGRKWVLNPGDGAFYGPKIDITIQDALKRNFQCATIQLDFQLPNQFDLSY------- 534

Query: 550 CVSFGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFD 609
                  E G+K+RPV+IHRAVLGSVERM AIL+ESY GKWP WLSPRQ +++ V  +  
Sbjct: 535 -----FDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITVHESVR 589

Query: 610 DYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTR 669
           DYA  V  ++F AGF  E + + GDT+NK+VR AQLAQFN+ILV+G +EK +GTVNVRTR
Sbjct: 590 DYANDVKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTR 649

Query: 670 DNKVHGEMSVEALIEHLNNLVRE 692
           DN V GE++++ LI        E
Sbjct: 650 DNAVRGEVALDKLISKFRRFADE 672


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score =  974 bits (2411), Expect = 0.0
 Identities = 438/683 (64%), Positives = 543/683 (79%), Gaps = 13/683 (1%)

Query: 11  TNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 70
           + A ++M PWP +I++RI LWDK KA+Y  +IA+K    + +TLPDGK  E K W+TTP+
Sbjct: 43  SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 102

Query: 71  DVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGE 130
           ++A+ IS+GLA+A +IA+VN  +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 103 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 162

Query: 131 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 190
           AMER  GG LCYGPPI+EGFYYDM++  + I   DF  ++ ++K   K+KQ FERLE+TK
Sbjct: 163 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 222

Query: 191 EQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSAT 250
           E LLEMF YN FKVRI+ EK+ TP TTVYRCGPLIDLCRGPHVRHTGKVKA+ +TKNS++
Sbjct: 223 EDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSS 282

Query: 251 YWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSC 310
           YWEGKA+AESLQR+YGISFP+ KQLKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS 
Sbjct: 283 YWEGKADAESLQRLYGISFPDSKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSA 342

Query: 311 FFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEK 370
           F+ P+GAHIYN LV+FI++QYR RGF EV+TPNMYN KLW+TSGHW HY+E+MF  +VEK
Sbjct: 343 FWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEK 402

Query: 371 ETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 430
           E F LKPMNCPGHCLMF +   ++ ELP R ADFGVLHRNE+SGALTGLTRVRRFQQDDA
Sbjct: 403 EEFGLKPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDA 462

Query: 431 HIFCAPQQIEAEIVGCLEFLKCVY-STFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDS 489
           HIFC   QI  EI  CL+FL+  Y   FGFTF+L LSTRPE +LG++ETW++AE  L ++
Sbjct: 463 HIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNA 522

Query: 490 LNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWC 549
           LN  G+ W LNPGDGAFYGPKIDITIQDAL+R+ QCATIQLDFQLP +F+L+Y       
Sbjct: 523 LNASGRKWVLNPGDGAFYGPKIDITIQDALKRNFQCATIQLDFQLPNQFDLSY------- 575

Query: 550 CVSFGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFD 609
                  E G+K+RPV+IHRAVLGSVERM AIL+ESY GKWP WLSPRQ +++ V  +  
Sbjct: 576 -----FDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITVHESVR 630

Query: 610 DYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTR 669
           DYA  V  ++F AGF  E + + GDT+NK+VR AQLAQFN+ILV+G +EK +GTVNVRTR
Sbjct: 631 DYANDVKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTR 690

Query: 670 DNKVHGEMSVEALIEHLNNLVRE 692
           DN V GE++++ LI        E
Sbjct: 691 DNAVRGEVALDKLISKFRRFADE 713


>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 37.9 bits (84), Expect = 0.024
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 317 AHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENM-FSFDVEKETFAL 375
           A +   L+++  E+  + GF  +  P++ + ++ Q  G        + ++   E+    L
Sbjct: 178 ASLEKALLDYAHERVCALGFRPITVPDIVSGEVTQACGVMQRSDHPIQYTLAGEESHTKL 237

Query: 376 KPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTG--LTRVRRFQQDDAHIF 433
                 G       RT +  +LP+RL       R E+S + +   L RV  F + +  + 
Sbjct: 238 SGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAKLYRVHEFSKVEMFVV 297

Query: 434 CAPQQIEAEIVGCLEFLKCVYSTFG 458
             P+Q  AE+   +E  K  +   G
Sbjct: 298 STPEQSAAELDYLVEVQKGTFQALG 322


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 37.9 bits (84), Expect = 0.024
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 317 AHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENM-FSFDVEKETFAL 375
           A +   L+++  E+  + GF  +  P++ + ++ Q  G        + ++   E+    L
Sbjct: 178 ASLEKALLDYAHERVCALGFRPITVPDIVSGEVTQACGVMQRSDHPIQYTLAGEESHTKL 237

Query: 376 KPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTG--LTRVRRFQQDDAHIF 433
                 G       RT +  +LP+RL       R E+S + +   L RV  F + +  + 
Sbjct: 238 SGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAKLYRVHEFSKVEMFVV 297

Query: 434 CAPQQIEAEIVGCLEFLKCVYSTFG 458
             P+Q  AE+   +E  K  +   G
Sbjct: 298 STPEQSAAELDYLVEVQKGTFQALG 322


>Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical
           protein T27F6.5a protein.
          Length = 454

 Score = 37.1 bits (82), Expect = 0.042
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 314 PRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSF-DVEKET 372
           P G  + + L   +  ++++ G  ++  P +   +LW+ +G W      M  F D ++  
Sbjct: 44  PLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEKTGRWEAMGPEMIRFHDRQQNH 103

Query: 373 FALKPMNCPGHC--LMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 430
             L+P      C  L+         + PL +   G   R+E++    GL R R+F   D 
Sbjct: 104 MCLQP-TAEEMCTELIATLSPLKKSQFPLIVYQIGEKFRDEMNPRF-GLMRGRQFLMKDM 161

Query: 431 HIF 433
           + F
Sbjct: 162 YSF 164


>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 31.1 bits (67), Expect = 2.8
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 1   MKEKKKKTEDTNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTV 60
           +++K KK ED      MN W + + ++I L ++   +YTE       + + +    G+  
Sbjct: 44  LEKKNKKEEDDLREQNMNLWNKNLDQQIALGNELNNKYTEISNQNSRLQIKI----GQEE 99

Query: 61  EAKAWKTTPYDVAK 74
           + + +K    DV+K
Sbjct: 100 DIRVFKIKLLDVSK 113


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 51  VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 96
           +V+LPD K++   A+AWK       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform b protein.
          Length = 619

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 51  VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 96
           +V+LPD K++   A+AWK       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform c protein.
          Length = 621

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 51  VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 96
           +V+LPD K++   A+AWK       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,427
Number of Sequences: 27539
Number of extensions: 815938
Number of successful extensions: 1747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1735
Number of HSP's gapped (non-prelim): 13
length of query: 703
length of database: 12,573,161
effective HSP length: 86
effective length of query: 617
effective length of database: 10,204,807
effective search space: 6296365919
effective search space used: 6296365919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)

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