BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001849-TA|BGIBMGA001849-PA|IPR001563|Peptidase S10, serine carboxypeptidase, IPR006195|Aminoacyl-transfer RNA synthetase, class II, IPR002320|Threonyl-tRNA synthetase, class IIa, IPR004154|Anticodon-binding, IPR012676|TGS-like, IPR004095|TGS, IPR012947|Threonyl/alanyl tRNA synthetase, SAD, IPR002314|tRNA synthetase, class II (G, H, P and S) (703 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 974 0.0 Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 974 0.0 U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 38 0.024 AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 38 0.024 Z82060-7|CAB04884.1| 454|Caenorhabditis elegans Hypothetical pr... 37 0.042 U40799-1|AAA81479.1| 250|Caenorhabditis elegans Hypothetical pr... 31 2.8 AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 30 6.4 AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 30 6.4 AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 30 6.4 >Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical protein C47D12.6b protein. Length = 684 Score = 974 bits (2411), Expect = 0.0 Identities = 438/683 (64%), Positives = 543/683 (79%), Gaps = 13/683 (1%) Query: 11 TNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 70 + A ++M PWP +I++RI LWDK KA+Y +IA+K + +TLPDGK E K W+TTP+ Sbjct: 2 SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 61 Query: 71 DVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGE 130 ++A+ IS+GLA+A +IA+VN +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE Sbjct: 62 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 121 Query: 131 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 190 AMER GG LCYGPPI+EGFYYDM++ + I DF ++ ++K K+KQ FERLE+TK Sbjct: 122 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 181 Query: 191 EQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSAT 250 E LLEMF YN FKVRI+ EK+ TP TTVYRCGPLIDLCRGPHVRHTGKVKA+ +TKNS++ Sbjct: 182 EDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSS 241 Query: 251 YWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSC 310 YWEGKA+AESLQR+YGISFP+ KQLKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS Sbjct: 242 YWEGKADAESLQRLYGISFPDSKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSA 301 Query: 311 FFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEK 370 F+ P+GAHIYN LV+FI++QYR RGF EV+TPNMYN KLW+TSGHW HY+E+MF +VEK Sbjct: 302 FWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEK 361 Query: 371 ETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 430 E F LKPMNCPGHCLMF + ++ ELP R ADFGVLHRNE+SGALTGLTRVRRFQQDDA Sbjct: 362 EEFGLKPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDA 421 Query: 431 HIFCAPQQIEAEIVGCLEFLKCVY-STFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDS 489 HIFC QI EI CL+FL+ Y FGFTF+L LSTRPE +LG++ETW++AE L ++ Sbjct: 422 HIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNA 481 Query: 490 LNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWC 549 LN G+ W LNPGDGAFYGPKIDITIQDAL+R+ QCATIQLDFQLP +F+L+Y Sbjct: 482 LNASGRKWVLNPGDGAFYGPKIDITIQDALKRNFQCATIQLDFQLPNQFDLSY------- 534 Query: 550 CVSFGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFD 609 E G+K+RPV+IHRAVLGSVERM AIL+ESY GKWP WLSPRQ +++ V + Sbjct: 535 -----FDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITVHESVR 589 Query: 610 DYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTR 669 DYA V ++F AGF E + + GDT+NK+VR AQLAQFN+ILV+G +EK +GTVNVRTR Sbjct: 590 DYANDVKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTR 649 Query: 670 DNKVHGEMSVEALIEHLNNLVRE 692 DN V GE++++ LI E Sbjct: 650 DNAVRGEVALDKLISKFRRFADE 672 >Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical protein C47D12.6a protein. Length = 725 Score = 974 bits (2411), Expect = 0.0 Identities = 438/683 (64%), Positives = 543/683 (79%), Gaps = 13/683 (1%) Query: 11 TNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTVEAKAWKTTPY 70 + A ++M PWP +I++RI LWDK KA+Y +IA+K + +TLPDGK E K W+TTP+ Sbjct: 43 SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 102 Query: 71 DVAKGISQGLADATIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQAVFWHSSAHMLGE 130 ++A+ IS+GLA+A +IA+VN +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE Sbjct: 103 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 162 Query: 131 AMERVYGGCLCYGPPIEEGFYYDMYYPEKGISSTDFNVLEGLIKKIAKEKQPFERLELTK 190 AMER GG LCYGPPI+EGFYYDM++ + I DF ++ ++K K+KQ FERLE+TK Sbjct: 163 AMERYCGGHLCYGPPIQEGFYYDMWHENRTICPDDFPKIDQIVKAAVKDKQKFERLEMTK 222 Query: 191 EQLLEMFDYNPFKVRILNEKVQTPTTTVYRCGPLIDLCRGPHVRHTGKVKALKVTKNSAT 250 E LLEMF YN FKVRI+ EK+ TP TTVYRCGPLIDLCRGPHVRHTGKVKA+ +TKNS++ Sbjct: 223 EDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAITKNSSS 282 Query: 251 YWEGKAEAESLQRVYGISFPEPKQLKEWEVIQEEAAKRDHRKIGREQELFFFHELSPGSC 310 YWEGKA+AESLQR+YGISFP+ KQLKEW+ +QEEAAKRDHRK+G+E +LFFFH+LSPGS Sbjct: 283 YWEGKADAESLQRLYGISFPDSKQLKEWQKLQEEAAKRDHRKLGKEHDLFFFHQLSPGSA 342 Query: 311 FFQPRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSFDVEK 370 F+ P+GAHIYN LV+FI++QYR RGF EV+TPNMYN KLW+TSGHW HY+E+MF +VEK Sbjct: 343 FWYPKGAHIYNKLVDFIRKQYRRRGFTEVITPNMYNKKLWETSGHWQHYSEDMFKIEVEK 402 Query: 371 ETFALKPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 430 E F LKPMNCPGHCLMF + ++ ELP R ADFGVLHRNE+SGALTGLTRVRRFQQDDA Sbjct: 403 EEFGLKPMNCPGHCLMFGHMPHTYNELPFRFADFGVLHRNEMSGALTGLTRVRRFQQDDA 462 Query: 431 HIFCAPQQIEAEIVGCLEFLKCVY-STFGFTFQLKLSTRPEKYLGDLETWNQAEKALEDS 489 HIFC QI EI CL+FL+ Y FGFTF+L LSTRPE +LG++ETW++AE L ++ Sbjct: 463 HIFCRQDQISEEIKQCLDFLEYAYEKVFGFTFKLNLSTRPEGFLGNIETWDKAEADLTNA 522 Query: 490 LNKFGKPWQLNPGDGAFYGPKIDITIQDALRRSHQCATIQLDFQLPERFNLTYSVVKFWC 549 LN G+ W LNPGDGAFYGPKIDITIQDAL+R+ QCATIQLDFQLP +F+L+Y Sbjct: 523 LNASGRKWVLNPGDGAFYGPKIDITIQDALKRNFQCATIQLDFQLPNQFDLSY------- 575 Query: 550 CVSFGCSETGDKKRPVIIHRAVLGSVERMVAILSESYAGKWPLWLSPRQLRVVPVGPAFD 609 E G+K+RPV+IHRAVLGSVERM AIL+ESY GKWP WLSPRQ +++ V + Sbjct: 576 -----FDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITVHESVR 630 Query: 610 DYAVQVNDKLFAAGFMSEVDTDAGDTLNKKVRNAQLAQFNYILVVGEREKNSGTVNVRTR 669 DYA V ++F AGF E + + GDT+NK+VR AQLAQFN+ILV+G +EK +GTVNVRTR Sbjct: 631 DYANDVKKQIFEAGFEIEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTR 690 Query: 670 DNKVHGEMSVEALIEHLNNLVRE 692 DN V GE++++ LI E Sbjct: 691 DNAVRGEVALDKLISKFRRFADE 713 >U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synthetase protein 1 protein. Length = 441 Score = 37.9 bits (84), Expect = 0.024 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Query: 317 AHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENM-FSFDVEKETFAL 375 A + L+++ E+ + GF + P++ + ++ Q G + ++ E+ L Sbjct: 178 ASLEKALLDYAHERVCALGFRPITVPDIVSGEVTQACGVMQRSDHPIQYTLAGEESHTKL 237 Query: 376 KPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTG--LTRVRRFQQDDAHIF 433 G RT + +LP+RL R E+S + + L RV F + + + Sbjct: 238 SGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAKLYRVHEFSKVEMFVV 297 Query: 434 CAPQQIEAEIVGCLEFLKCVYSTFG 458 P+Q AE+ +E K + G Sbjct: 298 STPEQSAAELDYLVEVQKGTFQALG 322 >AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA synthetase protein. Length = 441 Score = 37.9 bits (84), Expect = 0.024 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Query: 317 AHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENM-FSFDVEKETFAL 375 A + L+++ E+ + GF + P++ + ++ Q G + ++ E+ L Sbjct: 178 ASLEKALLDYAHERVCALGFRPITVPDIVSGEVTQACGVMQRSDHPIQYTLAGEESHTKL 237 Query: 376 KPMNCPGHCLMFDNRTRSWRELPLRLADFGVLHRNELSGALTG--LTRVRRFQQDDAHIF 433 G RT + +LP+RL R E+S + + L RV F + + + Sbjct: 238 SGTAEMGIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASEAKLYRVHEFSKVEMFVV 297 Query: 434 CAPQQIEAEIVGCLEFLKCVYSTFG 458 P+Q AE+ +E K + G Sbjct: 298 STPEQSAAELDYLVEVQKGTFQALG 322 >Z82060-7|CAB04884.1| 454|Caenorhabditis elegans Hypothetical protein T27F6.5a protein. Length = 454 Score = 37.1 bits (82), Expect = 0.042 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 5/123 (4%) Query: 314 PRGAHIYNTLVNFIKEQYRSRGFHEVVTPNMYNAKLWQTSGHWAHYAENMFSF-DVEKET 372 P G + + L + ++++ G ++ P + +LW+ +G W M F D ++ Sbjct: 44 PLGQRVIDKLCRILDVEFQNSGALKIAMPIVGTQQLWEKTGRWEAMGPEMIRFHDRQQNH 103 Query: 373 FALKPMNCPGHC--LMFDNRTRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDA 430 L+P C L+ + PL + G R+E++ GL R R+F D Sbjct: 104 MCLQP-TAEEMCTELIATLSPLKKSQFPLIVYQIGEKFRDEMNPRF-GLMRGRQFLMKDM 161 Query: 431 HIF 433 + F Sbjct: 162 YSF 164 >U40799-1|AAA81479.1| 250|Caenorhabditis elegans Hypothetical protein F42C5.3 protein. Length = 250 Score = 31.1 bits (67), Expect = 2.8 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 1 MKEKKKKTEDTNAVSEMNPWPEYIQKRITLWDKYKAQYTEQIASKPDISVVVTLPDGKTV 60 +++K KK ED MN W + + ++I L ++ +YTE + + + G+ Sbjct: 44 LEKKNKKEEDDLREQNMNLWNKNLDQQIALGNELNNKYTEISNQNSRLQIKI----GQEE 99 Query: 61 EAKAWKTTPYDVAK 74 + + +K DV+K Sbjct: 100 DIRVFKIKLLDVSK 113 >AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans homeobox protein 44,isoform a protein. Length = 1273 Score = 29.9 bits (64), Expect = 6.4 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 51 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 96 +V+LPD K++ A+AWK K + + + +VNNEL DL Sbjct: 92 IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139 >AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans homeobox protein 44,isoform b protein. Length = 619 Score = 29.9 bits (64), Expect = 6.4 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 51 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 96 +V+LPD K++ A+AWK K + + + +VNNEL DL Sbjct: 92 IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139 >AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans homeobox protein 44,isoform c protein. Length = 621 Score = 29.9 bits (64), Expect = 6.4 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 51 VVTLPDGKTV--EAKAWKTTPYDVAKGISQGLADATIIARVNNELWDL 96 +V+LPD K++ A+AWK K + + + +VNNEL DL Sbjct: 92 IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.319 0.136 0.419 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,450,427 Number of Sequences: 27539 Number of extensions: 815938 Number of successful extensions: 1747 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1735 Number of HSP's gapped (non-prelim): 13 length of query: 703 length of database: 12,573,161 effective HSP length: 86 effective length of query: 617 effective length of database: 10,204,807 effective search space: 6296365919 effective search space used: 6296365919 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 63 (29.5 bits)
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