GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001848-TA|BGIBMGA001848-PA|undefined
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    31   0.24 
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    30   0.41 
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    28   2.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   2.9  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   5.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.9  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   8.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   8.9  

>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 172 LYITSLWEIRIEKNPTQL-DGSIGDALLLTMSAVTQQAVIEPRRH 215
           L I  LW+I IE+N  +L    I      T S  T Q +I+P+RH
Sbjct: 292 LTIEQLWKIIIERNSRELISKEIERLKYATASNSTPQKIIQPQRH 336


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 226 EPVYRRIEETFQENEKCDLTEVDYINSLDAFTPVKKDSPYLEL 268
           +P Y+R     Q  ++ DL + DY+ SL   T V KD  Y+++
Sbjct: 333 QPEYQRAVRRMQRKKEIDLMDEDYLPSL--LTGVTKDRMYVQI 373


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 85  GMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDL 127
           G + D+  N  D    +   ++L GT  +H+  +  +I Y+ L
Sbjct: 140 GNIHDVWINTTDTHQMIGVHMTLNGTDMIHYYNKTYVINYSGL 182


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 115 FKERLEIITYTDLVAPMRMRF--VFRQPPLAYVANIFALPFSTGVWM-AVAI-ASIASTV 170
           FK+++ I+     V  + +     F QPP   +  I   P     W+  VAI A+I   V
Sbjct: 233 FKDKVLILLSIAAVVSLALGLYQTFGQPPT--LDPITGKPEPRVEWVEGVAIMAAIVIVV 290

Query: 171 TLYITSLWEIRIEKNPTQLDGSIGDALLLTMSAVTQQAVIEPRRHQGLFAFHSIVEPVYR 230
           T+   + W+  ++        S  D  +L   AV   +V +      LF     V PV  
Sbjct: 291 TVGGVNDWQKELQFKKLNAKVSNFDVQVLRDGAVHSTSVFDLVVGDVLFVEAGDVVPVDG 350

Query: 231 RIEET--FQENEKCDLTEVDYINSLDAFTPVKKDSPYLE 267
            + E+     +E     E D I  +DA T +++ SP +E
Sbjct: 351 VLIESNNLVLDESAMTGETDNIKKVDANTAIERTSPDVE 389


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 158 WMAVAIASIASTVTLYITSLWEIRIEKNPTQLDGSIGDALLLTMSAVT 205
           W+ V +A +     + + +LWE R  K P Q   +     LL +  +T
Sbjct: 423 WICVLVAYLQFRKAMILNNLWETRPYKTPFQPYATYLTLFLLALITLT 470


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 229  YRRIEETFQENEKCDLTEVDYINSLDAFTPVKKDSPYLELLRVSYKHVREVG 280
            YR  +  F+E     LT   +     AFT ++K    L+ L++    V  +G
Sbjct: 1942 YRNFDNIFRETSLYTLTTTSFKTHSQAFTLLQKVVDQLDQLKIHETLVHSLG 1993


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 52  CWVFAKVAFELLNATPRYIFSYRFG 76
           CW FA + FELL  T  Y+F  R G
Sbjct: 397 CWSFACIIFELL--TGDYLFDPRNG 419


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 57  KVAFELLNATPRYIFSYRFGYKVNGQWS 84
           ++A   +N    Y+FS + G+ +N +W+
Sbjct: 789 EIASRNINVLDNYLFSLQHGFDLNTEWA 816


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,140
Number of Sequences: 5004
Number of extensions: 59136
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 8
length of query: 340
length of database: 2,362,478
effective HSP length: 73
effective length of query: 267
effective length of database: 1,997,186
effective search space: 533248662
effective search space used: 533248662
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)