GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001848-TA|BGIBMGA001848-PA|undefined
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408...    32   0.57 
07_03_1603 + 28080561-28080706,28080752-28080834,28082055-280820...    30   3.1  
12_01_0340 - 2605770-2605916,2606353-2606595,2607260-2607531,260...    29   5.3  
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728...    29   7.1  
02_04_0427 - 22809481-22810335                                         28   9.3  

>11_01_0521 +
           4083594-4083763,4083765-4083963,4084059-4084244,
           4085834-4086025,4086979-4087200,4089238-4089444,
           4089681-4090082,4090201-4090230,4090307-4090318
          Length = 539

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 89  DIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPPLAYVANI 148
           D G+ + DL   +     L G  +M F        +T +VA + + FV     L Y A I
Sbjct: 425 DFGEYEKDLVIQVSLVCGLPGVMAMVFAHLASGPFWTSIVASLTLYFVIYSITLVYYAFI 484

Query: 149 FALPFSTGV----WMAVAIASIASTVTLYITSLWEIRIEK 184
             LP+S       +  V + +I   V L +  +W   ++K
Sbjct: 485 RLLPWSPWTRLQFYATVILLAIFLIVVLTMLIVWGSFVKK 524


>07_03_1603 +
           28080561-28080706,28080752-28080834,28082055-28082092,
           28083639-28084051,28084390-28084458,28084868-28084871,
           28086638-28086763
          Length = 292

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 12  RNLMGHHLTMANII-QDSNTTKYYLPRDDRLQLHHDAVAKVCWVFAKVAFELLNATPRYI 70
           R  + H+L + +I  Q +   + +     + Q   D   + CW+  KVA E+ N      
Sbjct: 223 RGRVTHYLRLCSIWRQQTKEIEMHFSSCKKTQGEKDCSGEPCWLLNKVAGEMFNTK---- 278

Query: 71  FSYRFGYKVNGQWS 84
           F +RFG   +  W+
Sbjct: 279 FGWRFGSWDSQDWN 292


>12_01_0340 -
           2605770-2605916,2606353-2606595,2607260-2607531,
           2607691-2607733,2607822-2607899,2608026-2608085,
           2608272-2608331,2609440-2609577,2609655-2609767,
           2610333-2610569,2610867-2610918
          Length = 480

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 152 PFSTGVWMAVAIASIASTVTLYITSLWEIRIEKNPTQLDG 191
           PFST    A A A+     TL I   W +R    PT  DG
Sbjct: 97  PFSTAAAAATATATARPPATLDIFPSWPMRRSSLPTPKDG 136


>02_05_0491 +
           29470575-29471351,29471574-29471806,29472697-29472856,
           29473149-29473394,29473492-29473628,29473874-29474207,
           29474283-29474444,29474717-29474791,29474866-29474966,
           29475042-29475111,29475210-29475266,29475357-29475418,
           29475505-29475577,29475663-29475884
          Length = 902

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 25  IQDSNTTKYYLPRDDRLQLHHDAVAKVCWVF-AKVAFELLNATPRYIFSYRF-GYKVNGQ 82
           ++D +T +  +PR  +L +      +    F   +++E  +  P  + S++F  Y V+G 
Sbjct: 453 VKDESTDQLLVPRMKKLGIKMFRSIRHTKDFDVSISYEKASELPPGVTSHKFVEYSVSGL 512

Query: 83  WSGMVRDIGDN-KADLEYDLHYSLSLKGTSSMHFKERLEIIT 123
                +    N  A ++ +LH+SLS  G  S+   E +  IT
Sbjct: 513 TDASEKYSSRNLSAPIKANLHFSLSRSGIISLDRAEAVIEIT 554


>02_04_0427 - 22809481-22810335
          Length = 284

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 91  GDNKADLEYDLHYSLSLKGTSSM----HFKERLEII 122
           GDN   + YD  Y+  + G +S     HFKE +E++
Sbjct: 6   GDNMHGVPYDFRYAAPIPGQASQVYSRHFKEFMELV 41


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,923,399
Number of Sequences: 37544
Number of extensions: 342269
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 5
length of query: 340
length of database: 14,793,348
effective HSP length: 83
effective length of query: 257
effective length of database: 11,677,196
effective search space: 3001039372
effective search space used: 3001039372
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)