Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001848-TA|BGIBMGA001848-PA|undefined
(340 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34) 43 4e-04
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0) 38 0.012
SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19) 33 0.33
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05) 31 1.0
SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4) 31 1.0
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 31 1.8
SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6) 29 4.1
SB_43595| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 29 5.4
SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13) 29 7.2
SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26) 28 9.5
SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19) 28 9.5
>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
Length = 960
Score = 42.7 bits (96), Expect = 4e-04
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 48 VAKVCWVFAKVAFEL----LNATPRYIFSY--RFGY--KVNGQWSGMVRDIGDNKADLEY 99
+A+ C+ FA EL LN P FS +FG +VN W+G+V+++ D+K D+
Sbjct: 408 LARCCYGFAIDVLELIKQALNFEPELRFSEDGQFGVYDEVNKTWNGIVKELLDDKGDITL 467
Query: 100 DLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPPLAYVANIFAL----PFST 155
DL+ S R ++ +T+ AP +R + ++ NI+ L PF+
Sbjct: 468 DLYIS-----------ARRATVLDFTEPYAPSGIRLLVKERS-GKGGNIYWLSYLRPFTM 515
Query: 156 GVWMA-VAIASIASTVTLYITSLWEIRIEKNP 186
VW+ + I S + L R E NP
Sbjct: 516 NVWLTLLGSMGIMSLFLWLVEKLAPCRQESNP 547
>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 729
Score = 37.9 bits (84), Expect = 0.012
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 79 VNGQWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFR 138
VNG+ +GMV D+ D KAD+ +++ + S + F + + D + + M+ + +
Sbjct: 220 VNGRVTGMVGDLIDKKADMAL-APITITAERESKIDFSK-----PFMDFMQSLIMKEM-K 272
Query: 139 QPPLAYVANIFALPFSTGVWMAVAIASIASTVTLYITSLW 178
+ ++ A F PF VW+ + + + T+ +++ LW
Sbjct: 273 EEEISLFA--FVQPFDGTVWLLIIVVVLFVTIMMFVVDLW 310
Score = 29.1 bits (62), Expect = 5.4
Identities = 18/90 (20%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 236 FQENEKCDLTEVDYINSLDAFT-PVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPKP 294
+ + E CD ++ + + ++ ++++SPY+ + V ++RE G ++ +
Sbjct: 507 YNKREPCDTILLNNLLTAKSYGFGMQRNSPYINEISVGILNLRESGFIERARVKWWDDRS 566
Query: 295 RCE--SKAVAFSSVGLLDLRPVLIMMMYGV 322
C + + S+G+ ++ V I++M GV
Sbjct: 567 ECPEIQQESSTQSLGIKNMAGVFIILMGGV 596
>SB_48408| Best HMM Match : Lig_chan (HMM E-Value=0.19)
Length = 705
Score = 33.1 bits (72), Expect = 0.33
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 82 QWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPP 141
+W GM+ D+ D KA+L SL L R E+I Y+++ R +
Sbjct: 504 RWCGMIGDLIDGKAELALT---SLELS-------LAREEVIDYSNVPLMYHDRVIVMAVK 553
Query: 142 LAYVANI---FALPFSTGVWMAVAIASIASTVTLYI 174
+Y ++ F PFST +W+ AS+ + +++
Sbjct: 554 SSYTSHDWFGFTKPFSTTLWITFGAASVILVIVVWL 589
>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
Length = 1084
Score = 31.5 bits (68), Expect = 1.0
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 82 QWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPP 141
+W GM+ D+ D KA+L SL L R E++ ++++ R +
Sbjct: 443 RWYGMIGDLIDGKAELALT---SLELS-------LAREEVVDFSNVPFIYHDRVIVMAVK 492
Query: 142 LAYVANI---FALPFSTGVWMAVAIASIASTVTLYI 174
+Y ++ F PFST +W+ AS+ + ++I
Sbjct: 493 SSYTSHDWFGFTKPFSTSLWITFGAASVILVIVVWI 528
>SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 31.5 bits (68), Expect = 1.0
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 82 QWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPP 141
+W+GM+ D+ D +A+L TS R ++I + D R +
Sbjct: 497 RWNGMIGDLVDGRAELAL----------TSFEMSSARQDVIDFADAAFMYHDRVIIMPVK 546
Query: 142 LAYVANI---FALPFSTGVWMAVAIASIASTVTLYITSLW 178
+Y ++ F PF T +W+A S+ + +++ ++
Sbjct: 547 SSYTSHDWFGFMKPFGTHLWVAFVSTSVVLVIMVWLIDMY 586
>SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4)
Length = 698
Score = 31.5 bits (68), Expect = 1.0
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 82 QWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPP 141
+W GM+ D+ D KA+L SL L R E++ ++++ R +
Sbjct: 115 RWYGMIGDLIDGKAELALT---SLELS-------LAREEVVDFSNVPFIYHDRVIVMAVK 164
Query: 142 LAYVANI---FALPFSTGVWMAVAIASIASTVTLYI 174
+Y ++ F PFST +W+ AS+ + ++I
Sbjct: 165 SSYTSHDWFGFTKPFSTSLWITFGAASVILVIVVWI 200
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 229 YRRIEETFQENEKCDLTEVDYINS-LDAFTPVKKDSPYLELLR 270
YR + F N++ ++ VD+ NS L A + ++ D PYL + R
Sbjct: 434 YRAVVSCFHGNDRVEVNYVDFGNSELVALSALRTDMPYLHVPR 476
>SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)
Length = 212
Score = 29.5 bits (63), Expect = 4.1
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 79 VNGQWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFR 138
V +W+G+VR++ + +ADL TS ER ++I +T + + + +
Sbjct: 131 VTKEWNGVVREVLNGRADLAV----------TSLTISPERQKVIDFTQPYMDLGLTVLIK 180
Query: 139 QPPLAYVANIFAL--PFSTGVWMAV 161
P N FA+ PF +WMA+
Sbjct: 181 PDP-TEEKNPFAILRPFRYDLWMAI 204
>SB_43595| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 216
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 246 EVDYINSLDAFTPVK----KDSPYLELLRVSYKHVREVGIQAAL 285
E +I SLDA PV+ K+SP L L S K + G++ L
Sbjct: 162 EASWIESLDALVPVQVNEIKNSPGLYKLTTSLKKIHRAGLREQL 205
>SB_32486| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 28.7 bits (61), Expect = 7.2
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 20/115 (17%)
Query: 69 YIFSYRFGY--KVNGQWSGMVRDIGDNKADLEYDL---HYSLSLKGTSSMHFKERLEIIT 123
YI FG K G W+G+V D+ N+AD+ L H + + + K L II
Sbjct: 457 YIEDGNFGIFNKRTGHWNGIVEDLMHNEADMGVGLAITHERAKVIDFAEPNSKIGLAIIV 516
Query: 124 YTDLVAPMRMRFVFRQPPLAYVANIFALPFSTGVWMAVAIASIASTVTLYITSLW 178
+ VF+ F LPF W+ V V L+I +W
Sbjct: 517 KINNAEHQEPNDVFK----------FLLPFDLNAWLCV-----LGIVHLFIVLIW 556
>SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)
Length = 880
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 80 NGQWSGMVRDIGDNKADLEYDL 101
+G+W+G+VRD+ +AD+ DL
Sbjct: 486 SGEWNGVVRDLIRGEADISIDL 507
>SB_41996| Best HMM Match : Tropomyosin (HMM E-Value=0.26)
Length = 363
Score = 28.3 bits (60), Expect = 9.5
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 183 EKNPTQLDGSIGDALLLTMSAVTQQAVIEPRRHQGLFAFHSIVEPVYRRIEETFQE-NEK 241
E N + + S D +L Q+++ + + Q + I +R+EE ++ EK
Sbjct: 24 EPNDSDIQSSSVDTSVLMDQLEQQRSMNKEKERQKEYLSSEI-----KRLEEKMEDYKEK 78
Query: 242 CDLTEVDYINSLDAFTPVKKDSPYLE 267
C+ +E N+L T ++K YL+
Sbjct: 79 CNSSEKKLNNALAVSTSLRKQMAYLK 104
>SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19)
Length = 1036
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 214 RHQGLFAFHSIVEPVYRRIEETFQENEKCDLTEVDYINSLDAFTPVKKDSPYLELL 269
R Q ++ + I++ ++ IE + QEN++ LT++ I++ A P +PY LL
Sbjct: 755 RSQDMWLTNFIIDAYFKLIESS-QENKRTTLTDI-LIDAEHAEYPTNPINPYRRLL 808
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,405,536
Number of Sequences: 59808
Number of extensions: 398310
Number of successful extensions: 1048
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 15
length of query: 340
length of database: 16,821,457
effective HSP length: 83
effective length of query: 257
effective length of database: 11,857,393
effective search space: 3047350001
effective search space used: 3047350001
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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