GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001848-TA|BGIBMGA001848-PA|undefined
         (340 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   7.0  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   9.3  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 153 FSTGVWMAVAIASIASTVTLYITSLWEIRIEKNPTQLDGSIGDALLLTMSAVTQQAVIEP 212
           F+T  W ++A A  A  V + +  + +        + D + G       + VTQ +++ P
Sbjct: 584 FNTASWQSIAEALQAKGVPVQLCRILQDYFADRELEYDTADGPVTRRVSAGVTQGSILGP 643


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 153 FSTGVWMAVAIASIASTVTLYITSLWEIRIEKNPTQLDGSIGDALLLTMSAVTQQAVIEP 212
           F+T  W A+A A  +  V  Y+  +     E      D S G       + V Q +++ P
Sbjct: 650 FNTANWQAIADALQSKNVPSYLMKIIGAYFEGRKLLFDTSEGPVERHISAGVPQGSILGP 709


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,326
Number of Sequences: 2123
Number of extensions: 12976
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 2
length of query: 340
length of database: 516,269
effective HSP length: 64
effective length of query: 276
effective length of database: 380,397
effective search space: 104989572
effective search space used: 104989572
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)