Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001848-TA|BGIBMGA001848-PA|undefined
(340 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic gl... 38 0.008
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 38 0.008
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 34 0.17
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 34 0.17
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 32 0.67
Z72502-3|CAA96588.1| 423|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic gl... 29 4.7
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 28 8.3
Z75712-7|CAB00046.1| 208|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z38112-8|CAA86235.2| 870|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical pr... 28 8.3
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 28 8.3
AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic gl... 28 8.3
>AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic
glutamate receptor GLR-6 protein.
Length = 396
Score = 38.3 bits (85), Expect = 0.008
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 64 NATPRYIFSYRFGYKVNG--QWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEI 121
N T + + ++G + NG +W GM+ +I AD+ +++ T RLE+
Sbjct: 40 NYTLKIVKDNKYGERKNGTDEWDGMIGEILRGDADMAVA---PITVTAT-------RLEV 89
Query: 122 ITYTDLVAPMRMRFVFRQPPLAYVANI--FALPFSTGVWMAVAIASIASTVTLYITSL 177
I +TD + + + RQP +++ F P S VW AIA++ + + + + ++
Sbjct: 90 IDFTDPFLQLGISMLMRQPNPKSSSSLTRFLWPLSASVWTFSAIATVITALLVTVAAV 147
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 38.3 bits (85), Expect = 0.008
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 64 NATPRYIFSYRFGYKVNG--QWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEI 121
N T + + ++G + NG +W GM+ +I AD+ +++ T RLE+
Sbjct: 452 NYTLKIVKDNKYGERKNGTDEWDGMIGEILRGDADMAVA---PITVTAT-------RLEV 501
Query: 122 ITYTDLVAPMRMRFVFRQPPLAYVANI--FALPFSTGVWMAVAIASIASTVTLYITSL 177
I +TD + + + RQP +++ F P S VW AIA++ + + + + ++
Sbjct: 502 IDFTDPFLQLGISMLMRQPNPKSSSSLTRFLWPLSASVWTFSAIATVITALLVTVAAV 559
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 78 KVNGQWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVF 137
+ +G W GM+ ++ +A + + SL++ +ER ++ ++ + +
Sbjct: 524 QADGSWDGMIGELLSGRA---HAVVASLTIN-------QERERVVDFSKPFMTTGISIMI 573
Query: 138 RQPPLA-YVANIFALPFSTGVWMAVAIASIASTVTLYITSL---WEIRIEKN-----PTQ 188
++P + F P ST +WM + A I +V +++ S +E R+E+
Sbjct: 574 KKPDKQEFSVFSFMQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRGGFTIS 633
Query: 189 LDGSIGDALLLTMSAVTQQAV-IEPRRHQGLFA 220
D S+ + L T++A QQ I PR G A
Sbjct: 634 NDFSVYNCLWFTLAAFMQQGTDILPRSISGRIA 666
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 20/153 (13%)
Query: 78 KVNGQWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVF 137
+ +G W GM+ ++ +A + + SL++ +ER ++ ++ + +
Sbjct: 524 QADGSWDGMIGELLSGRA---HAVVASLTIN-------QERERVVDFSKPFMTTGISIMI 573
Query: 138 RQPPLA-YVANIFALPFSTGVWMAVAIASIASTVTLYITSL---WEIRIEKN-----PTQ 188
++P + F P ST +WM + A I +V +++ S +E R+E+
Sbjct: 574 KKPDKQEFSVFSFMQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRGGFTIS 633
Query: 189 LDGSIGDALLLTMSAVTQQAV-IEPRRHQGLFA 220
D S+ + L T++A QQ I PR G A
Sbjct: 634 NDFSVYNCLWFTLAAFMQQGTDILPRSISGRIA 666
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 31.9 bits (69), Expect = 0.67
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 195 DALLLTMSAVTQQA---VIEPRRHQGLFAFHSIVEPVYRRIEETFQE-NEKCDLTEVDYI 250
D L T++ QQA VI+PRR+Q S ++ ++ I++ +EKC L + D I
Sbjct: 410 DTLYGTINRRPQQANITVIDPRRYQNCTIMLSKLKLSHKEIKQAMMSMDEKCKLPK-DMI 468
Query: 251 NSLDAFTPVKKD 262
+ F P K++
Sbjct: 469 EQMLKFMPTKEE 480
>Z72502-3|CAA96588.1| 423|Caenorhabditis elegans Hypothetical
protein C08B6.5 protein.
Length = 423
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 105 LSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQPPLAYVANIFALPFSTGVWMAVAIA 164
+ + G S R+E +T + + ++ ++P N PF+T +W+ + +A
Sbjct: 63 IDMSGLSMRITPARMEFAHFTFPIRYFQQVYIIKRPAENDFRNFVFAPFTTDMWL-LLLA 121
Query: 165 SI--ASTVTLYITSLWEIRI 182
+I AST+ W+ R+
Sbjct: 122 TIMGASTMRFACALYWDSRV 141
>Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical
protein K10D3.1 protein.
Length = 836
Score = 29.1 bits (62), Expect = 4.7
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 80 NGQWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQ 139
NG+WSGMV ++ ADL SL++ R E+I +T + + +F++
Sbjct: 457 NGKWSGMVGELQRGDADLAV---ASLTIS-------YGRSEVIDFTVPYMHLGISILFKK 506
Query: 140 PPLAYVANI-FALPFSTGVWMAVAIASIASTVTLYI 174
P + F P ST VW+ + +V ++I
Sbjct: 507 PRIRDSDWFKFMDPLSTQVWIMTFASYFVVSVAIWI 542
>AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic
glutamate receptor GLR-3 protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.7
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 80 NGQWSGMVRDIGDNKADLEYDLHYSLSLKGTSSMHFKERLEIITYTDLVAPMRMRFVFRQ 139
NG+WSGMV ++ ADL SL++ R E+I +T + + +F++
Sbjct: 53 NGKWSGMVGELQRGDADLAV---ASLTIS-------YGRSEVIDFTVPYMHLGISILFKK 102
Query: 140 PPLAYVANI-FALPFSTGVWMAVAIASIASTVTLYI 174
P + F P ST VW+ + +V ++I
Sbjct: 103 PRIRDSDWFKFMDPLSTQVWIMTFASYFVVSVAIWI 138
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 74 RFGYKVNGQWSGMVRDIGDNKADL 97
++G K W+G++ D+ NKAD+
Sbjct: 374 KWGLKTENGWNGLIADLMHNKADM 397
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 74 RFGYKVNGQWSGMVRDIGDNKADL 97
++G K W+G++ D+ NKAD+
Sbjct: 374 KWGLKTENGWNGLIADLMHNKADM 397
>Z75712-7|CAB00046.1| 208|Caenorhabditis elegans Hypothetical
protein K04G2.9 protein.
Length = 208
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 43 LHHDAVAKVCWVFAKVAFELLNATPRYIFSYRFGYKVNGQWSGMVRDIGDN 93
LH + CW A + F ++ A + S Y G WS DIG +
Sbjct: 108 LHLSHLDFFCWREADLLFNVICAVLFIVLSIVEAYYSTGSWSNNCNDIGSD 158
>Z38112-8|CAA86235.2| 870|Caenorhabditis elegans Hypothetical
protein C03C10.6 protein.
Length = 870
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 251 NSLDAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPKPRCESKAVAFSSVGLLD 310
+S + F P S ++LRVS H+ I L ++P+P VA S +
Sbjct: 337 HSTEMFVPANSRSVAKQMLRVSLHHLSTSAICLQLFDT-KIPRPDAFWSVVALSLADFPE 395
Query: 311 LRPVLIMMM 319
L PV + +
Sbjct: 396 LSPVYFIQI 404
>Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical
protein C03C10.6 protein.
Length = 870
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 251 NSLDAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPKPRCESKAVAFSSVGLLD 310
+S + F P S ++LRVS H+ I L ++P+P VA S +
Sbjct: 337 HSTEMFVPANSRSVAKQMLRVSLHHLSTSAICLQLFDT-KIPRPDAFWSVVALSLADFPE 395
Query: 311 LRPVLIMMM 319
L PV + +
Sbjct: 396 LSPVYFIQI 404
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 251 NSLDAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPKPRCESKAVAFSSVGLLD 310
+S + F P S ++LRVS H+ I L ++P+P VA S +
Sbjct: 1551 HSTEMFVPANSRSVAKQMLRVSLHHLSTSAICLQLFDT-KIPRPDAFWSVVALSLADFPE 1609
Query: 311 LRPVLIMMM 319
L PV + +
Sbjct: 1610 LSPVYFIQI 1618
>AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic
glutamate receptor NMR-2 protein.
Length = 433
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 74 RFGYKVNGQWSGMVRDIGDNKADL 97
++G K W+G++ D+ NKAD+
Sbjct: 81 KWGLKTENGWNGLIADLMHNKADM 104
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.137 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,689,629
Number of Sequences: 27539
Number of extensions: 306285
Number of successful extensions: 757
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 15
length of query: 340
length of database: 12,573,161
effective HSP length: 82
effective length of query: 258
effective length of database: 10,314,963
effective search space: 2661260454
effective search space used: 2661260454
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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