GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001848-TA|BGIBMGA001848-PA|undefined
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45430.1 68416.m04904 lectin protein kinase family protein co...    30   2.6  
At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containi...    30   2.6  
At5g56420.2 68418.m07043 F-box family protein contains F-box dom...    28   7.8  
At5g56420.1 68418.m07042 F-box family protein contains F-box dom...    28   7.8  

>At3g45430.1 68416.m04904 lectin protein kinase family protein
           contains Pfam domains PF00138: Legume lectins alpha
           domain and PF00069: Protein kinase domain
          Length = 613

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 265 YLELLRVSYKHVREVGIQAALNKRYQVPKPRCESKAVAFSSVGLLDLRPVLIMM 318
           Y  LL  S+   RE+      +K  QVP+PR E K V F+ +  L +   +++M
Sbjct: 188 YHYLLGWSFSTNRELSQLLDFSKLPQVPRPRAEHKKVQFALIIALPVILAIVVM 241


>At1g09190.1 68414.m01026 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 999

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 231 RIEETFQENEKCDLTEVDYINSLDAFTPVKK 261
           R+  T Q NE  DL EV++I S + F  V K
Sbjct: 457 RLSVTLQRNENMDLQEVEFIESSEIFKLVLK 487


>At5g56420.2 68418.m07043 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 254 DAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPK 293
           D  T + +DSP L +L++  KH+R      A  K+  +PK
Sbjct: 311 DLLTRLIEDSPKLRVLKLRQKHIRRAPSPRASWKQPALPK 350


>At5g56420.1 68418.m07042 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 254 DAFTPVKKDSPYLELLRVSYKHVREVGIQAALNKRYQVPK 293
           D  T + +DSP L +L++  KH+R      A  K+  +PK
Sbjct: 311 DLLTRLIEDSPKLRVLKLRQKHIRRAPSPRASWKQPALPK 350


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,317,591
Number of Sequences: 28952
Number of extensions: 288432
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 12,070,560
effective HSP length: 82
effective length of query: 258
effective length of database: 9,696,496
effective search space: 2501695968
effective search space used: 2501695968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)