GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001847-TA|BGIBMGA001847-PA|IPR002048|Calcium-binding
EF-hand, IPR011013|Galactose mutarotase-like
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    31   0.61 
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    29   2.5  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    28   3.2  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    28   3.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    28   4.3  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   5.7  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   5.7  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   5.7  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   9.9  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   9.9  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 523 VLSRYMEVTVSTHAVDKREPE-YTLYSPTSATLYVYSVKPAVFDLILTLAIVCY----LA 577
           +L  Y+E  V  H   +R    +  Y P   ++ ++ +      ++L+   + +    L 
Sbjct: 237 LLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCLPTQALFIVLSSVFLAWHSPPLQ 296

Query: 578 VVYFAIQAFPRFYEEYAKIVTGKTK 602
            V F I+    F   Y K V GKTK
Sbjct: 297 AVLFCIRRISFFNLLYEKFVIGKTK 321


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 120 DILADLQHSFITDDKSGTALEAMFNTVSSNGYQIVVSAPTPQKLDSKPVTLHGKL 174
           DIL  L  +F  +++SG  L   +NTV S G ++ +S P+    D   ++ H KL
Sbjct: 169 DIL--LSKAFPPEERSGANLRGDYNTVHSFG-KVELSPPSTPISDRTDLSYHKKL 220


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 161 QKLDSKPVTLHGKLIGRSGSAQTIVIAANYDSAALVPEISQGADCNAS 208
           QKLD+ P+T+HGK    S    +IV      ++ +   +++G   NA+
Sbjct: 32  QKLDASPLTIHGKFNTYSRGNISIVFGEAPSNSNIKDCLAEGTLLNAN 79


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 345 KDSGRSTVLDTPSEDRIQNLVSNVARIARALASHIYNITDDEN 387
           K SG+   +DT    R + L+ NV R  R   S +Y+I+++ N
Sbjct: 62  KHSGKKVPIDTTPTPRDEILLENV-RTVRKQRSSLYHISENRN 103


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 350 STVLDTPSEDRIQNLVSNVARIARALASHIYNITDDENDEDAGLYDDVL 398
           STV+    + +  +LVSN   +++  + H++ I   + DE +   DD L
Sbjct: 11  STVIKNAVQGQFTSLVSNNLVVSKVNSLHLFEIEKIQKDESSFPLDDSL 59


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 470 GVVTVRRISVVCSARALSLERVATGSIVRERDLDLHYKSDGHYESGVTGALERVLSRYM 528
           G V +R I     +  L + ++    +VRE   D  +K+D  ++S   GAL+  +  Y+
Sbjct: 45  GTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--FKTDLRFQSSAIGALQEAVEAYL 101


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 470 GVVTVRRISVVCSARALSLERVATGSIVRERDLDLHYKSDGHYESGVTGALERVLSRYM 528
           G V +R I     +  L + ++    +VRE   D  +K+D  ++S   GAL+  +  Y+
Sbjct: 45  GTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--FKTDLRFQSSAIGALQEAVEAYL 101


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 470 GVVTVRRISVVCSARALSLERVATGSIVRERDLDLHYKSDGHYESGVTGALERVLSRYM 528
           G V +R I     +  L + ++    +VRE   D  +K+D  ++S   GAL+  +  Y+
Sbjct: 45  GTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--FKTDLRFQSSAIGALQEAVEAYL 101


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 482 SARALSLERVATGSIVRERDLDLHYKSDGHYESGVTGALE-RVLSRYMEVTVSTHAVDKR 540
           +A+ L+     + S+V+  DL     S   Y+S V G L+ + L   +       ++D  
Sbjct: 53  AAKLLAESGKLSSSMVKRLDLS----SSDKYDSMVQGVLDVKSLPDPLGRVTYARSLDDG 108

Query: 541 EPEYTLYSPTSATLYVYSVKPAVFDLILTLAIVCYLAVV 579
              Y +  P    L ++  +P V   I +LAI    AVV
Sbjct: 109 LDLYKVSCPVGLLLVIFEARPEVIINITSLAIKSGNAVV 147


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 557 YSVKPAVFDLIL-TLAIVCYLAVVYFA 582
           Y   PAV D I+ ++A+VC + ++YF+
Sbjct: 71  YCELPAVADAIINSIALVCIIVILYFS 97


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,947
Number of Sequences: 5004
Number of extensions: 96143
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 10
length of query: 604
length of database: 2,362,478
effective HSP length: 77
effective length of query: 527
effective length of database: 1,977,170
effective search space: 1041968590
effective search space used: 1041968590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)