Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001847-TA|BGIBMGA001847-PA|IPR002048|Calcium-binding
EF-hand, IPR011013|Galactose mutarotase-like
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 167 2e-41
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 38 0.023
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 32 1.5
07_01_0860 - 7142913-7144895 31 3.5
07_03_0418 + 17979504-17980964 30 6.1
07_03_0415 + 17920383-17921843 30 6.1
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 167 bits (407), Expect = 2e-41
Identities = 129/400 (32%), Positives = 197/400 (49%), Gaps = 43/400 (10%)
Query: 9 ASHEFSVYRMQQYDLHTVPHGCRSASFNLEGRSL---TSWSTSRHCVVARVQDITL---E 62
A+ VYR+ QYDL P G R+A+ N +L + SR +VA + D+ L
Sbjct: 33 AAAAVGVYRLIQYDLAGAPLGSRAAALNHHAAALPLPAAADLSRSALVAPLLDLPLAFLR 92
Query: 63 QFLEIRNKAGALLLVLPKNETLLTPEE-----REHIQLLEMAMVQQEINAPVYFARWTPE 117
+L + G LL++LPK E + + LE ++ Q++ PVYFA
Sbjct: 93 DYLADKKYLGGLLILLPKKLNHEPNNEDKGQVKASLAELEQLLLHQQVPYPVYFAFQDDH 152
Query: 118 MEDILADLQHSFITDDKSGTALEAMFNTVSSNGYQIVVSAPTPQKLDSKPVT-LHGKLIG 176
+++LAD++ SG A ++ GY++VVS P P+K+ S ++ + G L G
Sbjct: 153 FDNLLADIRKIA----SSGQPASA-----TTGGYKLVVSTPEPRKVASPTISNIQGWLPG 203
Query: 177 RSGSAQT-----IVIAANYDSAALVPEISQGADCNASGAVALLELARIFSRIYSTAGGRG 231
G +T I I +NYD+ P +S G+D N SGAVALLE+AR+FSR+YS RG
Sbjct: 204 LKGEGETEQLPTIAIVSNYDTFGAAPALSVGSDSNGSGAVALLEIARLFSRLYSNPKTRG 263
Query: 232 APTLVFVLTSVGHSLNYFATKKWLEEQLDSSDASLLQDVSFVSCMECVSR--GPVRMHVX 289
L+F LTS G NY T KWL S D + + + + C+ V + MHV
Sbjct: 264 KYNLLFGLTS-GGPYNYNGTNKWLR----SFDQRVRESIDYAICLNSVGSWDNELWMHVS 318
Query: 290 --------XXXXXXXXXXXXXXXLGAPLQHKKINLADELLAWHHERFSIRRMTAFTLSSL 341
+ ++HKKIN+++ +AW HE+FS R+TA TLS L
Sbjct: 319 KPPENPYIKQIFEDFSDVSKEMGVSVGIKHKKINVSNPRVAWEHEQFSRFRVTALTLSEL 378
Query: 342 QSHKDSGRST--VLDTPSEDRIQNLVSNVARIARALASHI 379
S D ST + DT ++++ V ++ +LA+++
Sbjct: 379 SSPPDFLESTGGLYDTRESADAESVIRTVRLVSESLANNL 418
Score = 38.3 bits (85), Expect = 0.017
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 519 ALERVLSRYM-EVTVSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAIVCYLA 577
AL++ LS + +V V + +D +T Y T ATL VY V FDL+ L I YL
Sbjct: 475 ALKKELSEHTADVHVQSDVLDGM---FTFYDATKATLNVYQVASVTFDLLFLLVIGSYLI 531
Query: 578 VVY 580
+++
Sbjct: 532 ILF 534
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 37.9 bits (84), Expect = 0.023
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 184 IVIAANYDSAALVPEISQGADCNASGAVALLELARIFSRIYSTAGGRGAPTLVFVLTSVG 243
I++ A+ DSA+ + S GAD SG +ALL S ++ + + LVF + + G
Sbjct: 163 IMVTASQDSASFFRDRSLGADSPISGLIALLTAVDALSHLHDISNLK--KQLVFAVFN-G 219
Query: 244 HSLNYFATKKWLEEQLDSSDA 264
+ Y ++K+L+E +D+
Sbjct: 220 EAWGYLGSRKFLQELDQGADS 240
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 31.9 bits (69), Expect = 1.5
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 69 NKAGALLLVLPKNETLLTPEEREHIQLLEMAMVQQEINAPVYFA 112
N G L +P+ T+ TPEERE IQ LE +E+ V+FA
Sbjct: 348 NILGQLAAAMPQALTV-TPEEREAIQRLEAMGFNRELVLEVFFA 390
>07_01_0860 - 7142913-7144895
Length = 660
Score = 30.7 bits (66), Expect = 3.5
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 142 MFNTVSSNGYQIVVSAPTPQKLDSKPVTLHGKLIGRSGSAQTIVIAANYDSAALVPEISQ 201
+ V+S G +V +P P + P T L S T+ IA SA +V ++
Sbjct: 224 VLENVNSLGTSDLVPSPPPPP--ASPTTASRPLPSSSSRRNTVAIAVGSASAVVVAVVAV 281
Query: 202 GADCNASGAVALLELARIFSRIYSTAGGRGAPTLVFVLTSVGHSLNYFATKKWLEEQLDS 261
AS A+A++ + R R +TAG V L + Y TK L++ +
Sbjct: 282 -----ASAALAIVTIRR-RRRSTTTAGDVSDDESVASLPPLPREGLYIFTKSELKQATNG 335
Query: 262 SDASLL 267
D LL
Sbjct: 336 YDEKLL 341
>07_03_0418 + 17979504-17980964
Length = 486
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 373 RALASHIYNITDDENDEDAGLYDDVLLPARRLRATV---AGTIEGPELAAMPVR 423
R L + N T+D+ND + +V +R RA V A ++EGP LA + R
Sbjct: 197 RDLPGNFRNCTEDQNDPIVQMLIEVTAHSRGARAVVLNTAASMEGPALAHVAPR 250
>07_03_0415 + 17920383-17921843
Length = 486
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 373 RALASHIYNITDDENDEDAGLYDDVLLPARRLRATV---AGTIEGPELAAMPVR 423
R L + N T+D+ND + +V +R RA V A ++EGP LA + R
Sbjct: 197 RDLPGNFRNCTEDQNDPIVQMLIEVTAHSRGARAVVLNTAASMEGPALAHVAPR 250
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,673
Number of Sequences: 37544
Number of extensions: 627963
Number of successful extensions: 1564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 9
length of query: 604
length of database: 14,793,348
effective HSP length: 86
effective length of query: 518
effective length of database: 11,564,564
effective search space: 5990444152
effective search space used: 5990444152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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