GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001847-TA|BGIBMGA001847-PA|IPR002048|Calcium-binding
EF-hand, IPR011013|Galactose mutarotase-like
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41492| Best HMM Match : Hexose_dehydrat (HMM E-Value=8)             69   8e-12
SB_8588| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   2e-07
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    38   0.023
SB_39236| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.29 
SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.38 
SB_43249| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.50 
SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)                   31   2.0  
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    31   3.5  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    30   4.7  
SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.7  
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.2  
SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)                 29   8.2  

>SB_41492| Best HMM Match : Hexose_dehydrat (HMM E-Value=8)
          Length = 155

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 311 HKKINLADELLAWHHERFSI--RRMTAFTLSSLQSHKDSGRSTVLDTPSEDRIQNLVSNV 368
           HKKINLAD+ L+W HERFS+  +R+ A TLS  +    +GR ++ D  S      L +N+
Sbjct: 11  HKKINLADDTLSWEHERFSVHTQRLPAGTLSHYEDPTATGRGSIFDVRSPAHDSKLETNI 70

Query: 369 ARIARALASHIYNIT 383
             IA  LA HI+N+T
Sbjct: 71  KFIAETLARHIFNLT 85


>SB_8588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 2/105 (1%)

Query: 37  LEGRSLTSWSTSRHCVVARVQDITLEQFLE-IRNKAGALLLVLPKNETLLTPEEREHIQL 95
           +E R ++  + +R CVV+R+ ++++++  E I   AG LL++LP++ + L  +E E  Q 
Sbjct: 1   MEARPISGSALTRRCVVSRLSELSIDRVHEVIEQGAGGLLILLPRDLSKLNQQEVEEWQT 60

Query: 96  LEMAMVQQEINAPVYFARWTPEMEDILADLQHSFITDDKSGTALE 140
           LE  ++ Q +   VYFA     + D+   ++ + I  D++ +A E
Sbjct: 61  LEKELLFQSVPVAVYFAYEDDYLLDVYKHIKVA-INSDQAKSAFE 104


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 37.9 bits (84), Expect = 0.023
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 56  VQDITLEQFLEIRNKAGALLLVLPKNETLLTPEEREHIQLLEMAMVQQEINAPVYFARWT 115
           V + T+   L++ +K    L ++ KN+  + PE  E      + M   EI       RW 
Sbjct: 245 VTNPTMAGVLDLWHKTFGTLRLVDKNDIQMRPEALELAMFQNVVMRHIEIAKETLLKRWF 304

Query: 116 PEMEDI-LADLQHSFITDDKSGTALEAMFNTVS 147
           PE+++I     +   +  +++   LEA FN+ S
Sbjct: 305 PEVQNIYYQGNKRKQVPSNQNAKRLEAFFNSAS 337


>SB_39236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 34.3 bits (75), Expect = 0.29
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 182 QTIVIAANYDSAALVPEISQGADCNASGAVALLELAR 218
           + +V+AA  DS++   ++  GAD +ASG +ALL  A+
Sbjct: 74  EIVVVAAKMDSSSFFHDLVYGADNDASGVIALLAAAK 110


>SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 33.9 bits (74), Expect = 0.38
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 532 VSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAI 572
           + T  V +  P YTLYS  + T Y++S +P    +I TL +
Sbjct: 257 IYTLLVQQPYPLYTLYSSNNRTRYIHSTRPTTVPVIYTLRV 297



 Score = 31.1 bits (67), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 532 VSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAI 572
           + T  V    P YTLY+    T Y++S +P    +I TL +
Sbjct: 292 IYTLRVQPPYPLYTLYASNHRTRYIHSTRPTTVPVIYTLRV 332



 Score = 31.1 bits (67), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 532 VSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAI 572
           + T  V    P YTLY+    T Y++S +P    +I TL +
Sbjct: 397 IYTLRVQPPYPLYTLYASNHRTRYIHSTRPTTVPVIYTLRV 437



 Score = 30.3 bits (65), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 532 VSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAI 572
           + T  V    P YTLY+    T Y++S +P    +I TL +
Sbjct: 327 IYTLRVQPPYPLYTLYASNHRTRYMHSTRPTTVPVIYTLLV 367



 Score = 29.5 bits (63), Expect = 8.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 532 VSTHAVDKREPEYTLYSPTSATLYVYSVKPAVFDLILTLAI--VCYLAVVY 580
           + T  V    P YTLY+    T Y++S +P    +  TL +   C L  +Y
Sbjct: 187 IYTLRVQPPYPLYTLYASNHRTRYIHSTRPTTVPVRCTLRVQPPCPLCTLY 237


>SB_43249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 325 HERFSIRRMTAFTLSSLQSHKDSGRSTVLDTPSEDRIQNLVSNVARIARALASHIYNITD 384
           H+R S RRM++  L  LQ++KDS  S VL+        N +  +A I     SH+     
Sbjct: 124 HKRMS-RRMSSLILFELQNNKDSFISQVLNIRKRSTTDNTLPEMAVIQEDTKSHLSLQEG 182

Query: 385 DE 386
           DE
Sbjct: 183 DE 184


>SB_53092| Best HMM Match : TT_ORF2 (HMM E-Value=3.4)
          Length = 598

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 424 HHPHHSVRSTDCRIYISCXXXXXXXXXXXXXXXFYAVLLRTNDIDMGVV-TVRRISVVCS 482
           HH     + + CR+Y SC                 AVLL+ +     +V     I+   S
Sbjct: 463 HHQEQDRKVSKCRLYQSCQRGRVLESVQSADFTSRAVLLKASSSKSIIVWNWTHIAATYS 522

Query: 483 ARALSLERVATGSIVRERDLDLHYKSD-GHY 512
           A  +  +    G +V+ER    +   D GH+
Sbjct: 523 AEEMLAKVYVNGKLVKERSAYGYLSQDWGHF 553


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 336 FTLSSLQSHKDSGRSTVLDTPSEDRIQNLVSNVARIARALASHIYNITDDENDEDAGLYD 395
           FTL   Q+H      ++ +TP    ++ + S +      L S I +  ++E         
Sbjct: 96  FTLKGHQAHSKQNLKSLSNTPGGTALKKICSQLEPFLDNLYSEIPDFVEEEGKR------ 149

Query: 396 DVLLPARRLRATVAGTIEGPELAAMPVRHHP 426
            + +   R+   ++  + GP++  +P+ H P
Sbjct: 150 VLFIKKMRIYLEISRKLNGPDVLCVPIFHCP 180


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 306  GAPLQHKKINLADELLAWHHERFSIR------RMTAFTLSSLQSH---KDSGRSTVLDTP 356
            G   Q+  IN ++ L   +  RF IR      + T +T   +Q     K++GR T   TP
Sbjct: 1440 GTSSQNLVIN-SNSLRGGYEYRFRIRATAVMTQSTGYTEKQVQPPGFCKNNGRETGFGTP 1498

Query: 357  SEDRIQNLVSNVARIARALASHIYNIT-----DDENDEDAGLYDD 396
             +D +  +V  +  I R +   + N       DD+  +D G++ D
Sbjct: 1499 LQDPVMIMVITMMMIIRIMMMVMQNYDDNNAGDDDEIDDGGIFSD 1543


>SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 144 NTVSSNGYQIVVSAPTPQKLDSKPVTLHGKLIGRSGSAQTIVIAANYDSAALVPEISQGA 203
           +TV+S+G ++  S    Q+  S  V    K   +S SAQ + I   YD A     +++  
Sbjct: 117 STVASSGSKLTKSTEKLQR-QSPSVAASTKPAAQSTSAQKVTITKTYDFAGEAVTVTKTV 175

Query: 204 DCNASGA 210
           D  +S A
Sbjct: 176 DAESSEA 182


>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 44  SWSTSRHCVVARVQDITLEQFLEIRNKAGALLLV-LPKNET 83
           +W ++  CV  +  D  LE FL IR++  A  LV L KN+T
Sbjct: 415 AWESTWECVAMKKVDDLLENFLGIRDEELANTLVDLSKNKT 455


>SB_52669| Best HMM Match : zf-C3HC4 (HMM E-Value=0.05)
          Length = 280

 Score = 29.5 bits (63), Expect = 8.2
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 361 IQNLVSNVARIARALASHIYNITDDE-NDEDAGLYDD 396
           + NL+  +A++A +  S +   TDDE +DED G  DD
Sbjct: 209 LPNLLDKLAQLAESFNSGLLRSTDDECDDEDDGEGDD 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,748
Number of Sequences: 59808
Number of extensions: 698063
Number of successful extensions: 1813
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1793
Number of HSP's gapped (non-prelim): 23
length of query: 604
length of database: 16,821,457
effective HSP length: 86
effective length of query: 518
effective length of database: 11,677,969
effective search space: 6049187942
effective search space used: 6049187942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)