Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001846-TA|BGIBMGA001846-PA|undefined
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 30 3.5
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224... 29 4.7
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 29 4.7
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 29 4.7
09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946 29 6.2
05_04_0073 + 17669311-17671635 29 6.2
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822... 29 8.1
07_03_0394 - 17633753-17636788 29 8.1
03_01_0118 - 929956-929988,930059-930145,930230-930331,930515-93... 29 8.1
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 144 SFNANEFLTPSESNTLDDLQLNQSMTCTDSETFDAKYKKDKENTTVHSKIK 194
+F N + PS+ D +++++ C + T + KK K+N V++ K
Sbjct: 240 TFKCNRWRKPSDPKEKDLPEVDEAENCLQTNTTNPLVKKRKQNKVVYTNCK 290
>10_01_0209 +
2236530-2237301,2239196-2239297,2239535-2239716,
2240210-2240420,2240526-2240766,2240861-2241011,
2241116-2241424
Length = 655
Score = 29.5 bits (63), Expect = 4.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 4 DWFRNLKVVDGIRLDNYFLYKHDLYRAVYIHR 35
DW++ L++++GI +L+KH R IHR
Sbjct: 431 DWYKRLEIIEGIAHGLLYLHKHS--RLSVIHR 460
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 29.5 bits (63), Expect = 4.7
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 308 IKXXXXXXXXXXXVNRDNSDVVEFIYNDNVIKGNLGCGEV---QDKKMSASVGVKT 360
+K VN+ NSDV N N NL CG V QD K+ VG++T
Sbjct: 560 VKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKV-LDVGLET 614
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 29.5 bits (63), Expect = 4.7
Identities = 15/81 (18%), Positives = 32/81 (39%)
Query: 291 VRNVVKSSRLEELSKDVIKXXXXXXXXXXXVNRDNSDVVEFIYNDNVIKGNLGCGEVQDK 350
+ +KS R+ ++ +D+ D S++ + + G++ C D
Sbjct: 492 IEGKIKSCRVHDIMRDITVSISREENFVFLPVHDGSNLAQENTRHIALHGSMSCKTGLDW 551
Query: 351 KMSASVGVKTDRPNRIPARFC 371
+ S+ + DRPN + C
Sbjct: 552 SIIRSLAIFGDRPNNLAHTIC 572
>09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946
Length = 209
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 7 RNLKVVDGIRLDNYFLYKHDLYRAVYIHRKYLKYY 41
+N+ +D IRL +F+Y +Y + +KY+KY+
Sbjct: 152 KNIIPLDYIRLAVFFVYFSSVYSEIKGAKKYMKYF 186
>05_04_0073 + 17669311-17671635
Length = 774
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 66 KNETVIHDSILEQTVRFAKSLVPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
K++ + D + + V F + VP +PP +P +Y ++ GH+ K +
Sbjct: 108 KDKDFVKDDFIGR-VLFDLNEVPKRVPPDSPLAPQWYRLEERNGHKVKGE 156
>08_01_0841 +
8223768-8223871,8227749-8228745,8228779-8228828,
8228896-8230396
Length = 883
Score = 28.7 bits (61), Expect = 8.1
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 242 LGDIKALACKDNMKSLQTHLLCNTQKLDNILVTLACIEKKLDAHIEKTT---VRNVVKSS 298
L D+K+ + + ++++ HL+ Q +DN + + + K L +E TT +NVV +
Sbjct: 113 LSDLKSRIVEVSERNMRYHLVIADQVIDNHMNFMVALNKVLSRSVEGTTDNWTQNVVTWA 172
Query: 299 RLEELS 304
E S
Sbjct: 173 EAPEES 178
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 87 VPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
VP +PP +P +Y + +GHR K +
Sbjct: 363 VPLRVPPDSPLAPEWYRLVGKEGHRDKGE 391
>03_01_0118 -
929956-929988,930059-930145,930230-930331,930515-930610,
931053-931148,931502-931564,931565-931630,931716-931790,
931906-932077,932116-932285
Length = 319
Score = 28.7 bits (61), Expect = 8.1
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 199 VSVQKIRNVD--GDTEIKALVMNESDINTLAESIQEPILNALKGCLGDI 245
V+V K R ++ G + + + ++ +IN + E+++ P+LN L LG I
Sbjct: 89 VAVSKARGMELAGAIDSQCVGLDAGEINGMEEALEIPVLNDLTMVLGSI 137
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,451
Number of Sequences: 37544
Number of extensions: 290789
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 9
length of query: 379
length of database: 14,793,348
effective HSP length: 83
effective length of query: 296
effective length of database: 11,677,196
effective search space: 3456450016
effective search space used: 3456450016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 61 (28.7 bits)
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