GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001846-TA|BGIBMGA001846-PA|undefined
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    29   0.82 
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   1.9  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    28   2.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   5.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   5.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   7.6  

>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 177 DAKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTE 212
           + K  +DK+N++++ KI+  NS S +   N +GD++
Sbjct: 5   EKKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQ 40


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 164 LNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTEIK 214
           +N  +TC +S  +     K KE T  +  +KNI+S    K+ ++ G T+ K
Sbjct: 705 INDLITCLNSFLYHVSATKKKEFTRQYQLLKNISS---NKLGSISGITKHK 752


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 213 IKALVMNESDINTLAESIQEPILNALKGCLGDIKALA----CKDNMKSLQTHLLCNTQKL 268
           I A V   SD+ TLA+    P++N L      ++ALA     K+  KS     +      
Sbjct: 111 IVARVNKYSDVATLAKHASCPVINGLCDTFHPLQALADLLTIKETFKSFDGLKVAWVGDA 170

Query: 269 DNILVTLACIEKKLDAHIEKTTVRNV 294
           +N+L  L     K+  H      ++V
Sbjct: 171 NNVLHDLMIANAKVGIHTSVAKPKDV 196


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 153 PSESNTLD-DLQLNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQKIRNVDG-- 209
           P ++N+   D+  +  M   D+E F A +K  KEN   HS I     VS     N  G  
Sbjct: 464 PIDTNSSKCDMSASTEMHLKDTEKF-ANFKL-KENILNHSSIYE-RDVSYLPALNKGGRE 520

Query: 210 ---DTEIKALVMNESDINT----LAESIQEPILNALKGCLGDIKALACKDNMKSLQTHLL 262
              +  + +  + +  +N+    +   IQ  IL     CL ++K   C  N  S+Q +L 
Sbjct: 521 NYLNNRVSSYRLVKPILNSYGNHVLNRIQHDILENHFCCLKNVKDFVCGANTISMQWNLQ 580

Query: 263 CNTQKLDNI--LVTLACIEKKLDAHIEKTTVRNVVKSSRLE 301
            N + + ++  L+     +   ++ I +T   + V ++RL+
Sbjct: 581 KNMEFISSVFSLIKNEVNDTSANSVILRTDALSNVATTRLK 621


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 291 VRNVVKSSRLEELSKDVIKXXXXXXXXXX-XVNRDNSDVVEFIYNDN 336
           V   VK++    +S+ ++K            V   NSDVV+F+Y D+
Sbjct: 853 VDTAVKTAETGYMSRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDD 899


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 152 TPSESNTLDDL--QLNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSV 199
           T S ++TL+    +LN SMT    +TF A   ++  N  ++ KI+N   V
Sbjct: 455 TLSLNSTLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEEV 504


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/77 (20%), Positives = 33/77 (42%)

Query: 153 PSESNTLDDLQLNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTE 212
           PS S +L       +     SET  ++       + +HS +K +++  V+++  V+    
Sbjct: 323 PSASASLASSPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVKPVSNEQVEQVTEVELSIP 382

Query: 213 IKALVMNESDINTLAES 229
           + ++   ES    L  S
Sbjct: 383 VPSIQEAESQKPVLTGS 399


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,830
Number of Sequences: 5004
Number of extensions: 57693
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 8
length of query: 379
length of database: 2,362,478
effective HSP length: 74
effective length of query: 305
effective length of database: 1,992,182
effective search space: 607615510
effective search space used: 607615510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 55 (26.2 bits)