GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001846-TA|BGIBMGA001846-PA|undefined
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357...    30   3.5  
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224...    29   4.7  
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258     29   4.7  
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687...    29   4.7  
09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946     29   6.2  
05_04_0073 + 17669311-17671635                                         29   6.2  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    29   8.1  
07_03_0394 - 17633753-17636788                                         29   8.1  
03_01_0118 - 929956-929988,930059-930145,930230-930331,930515-93...    29   8.1  

>06_03_0498 -
           21432958-21434245,21434579-21435310,21435502-21435788,
           21435955-21436026,21436130-21436264,21436887-21436925
          Length = 850

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 144 SFNANEFLTPSESNTLDDLQLNQSMTCTDSETFDAKYKKDKENTTVHSKIK 194
           +F  N +  PS+    D  +++++  C  + T +   KK K+N  V++  K
Sbjct: 240 TFKCNRWRKPSDPKEKDLPEVDEAENCLQTNTTNPLVKKRKQNKVVYTNCK 290


>10_01_0209 +
           2236530-2237301,2239196-2239297,2239535-2239716,
           2240210-2240420,2240526-2240766,2240861-2241011,
           2241116-2241424
          Length = 655

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 4   DWFRNLKVVDGIRLDNYFLYKHDLYRAVYIHR 35
           DW++ L++++GI     +L+KH   R   IHR
Sbjct: 431 DWYKRLEIIEGIAHGLLYLHKHS--RLSVIHR 460


>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
          Length = 700

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 308 IKXXXXXXXXXXXVNRDNSDVVEFIYNDNVIKGNLGCGEV---QDKKMSASVGVKT 360
           +K           VN+ NSDV     N N    NL CG V   QD K+   VG++T
Sbjct: 560 VKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKV-LDVGLET 614


>06_01_1193 +
           10264360-10264504,10264763-10264910,10268350-10268748,
           10268925-10271214
          Length = 993

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/81 (18%), Positives = 32/81 (39%)

Query: 291 VRNVVKSSRLEELSKDVIKXXXXXXXXXXXVNRDNSDVVEFIYNDNVIKGNLGCGEVQDK 350
           +   +KS R+ ++ +D+                D S++ +       + G++ C    D 
Sbjct: 492 IEGKIKSCRVHDIMRDITVSISREENFVFLPVHDGSNLAQENTRHIALHGSMSCKTGLDW 551

Query: 351 KMSASVGVKTDRPNRIPARFC 371
            +  S+ +  DRPN +    C
Sbjct: 552 SIIRSLAIFGDRPNNLAHTIC 572


>09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946
          Length = 209

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 7   RNLKVVDGIRLDNYFLYKHDLYRAVYIHRKYLKYY 41
           +N+  +D IRL  +F+Y   +Y  +   +KY+KY+
Sbjct: 152 KNIIPLDYIRLAVFFVYFSSVYSEIKGAKKYMKYF 186


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 66  KNETVIHDSILEQTVRFAKSLVPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
           K++  + D  + + V F  + VP  +PP    +P +Y ++   GH+ K +
Sbjct: 108 KDKDFVKDDFIGR-VLFDLNEVPKRVPPDSPLAPQWYRLEERNGHKVKGE 156


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 242 LGDIKALACKDNMKSLQTHLLCNTQKLDNILVTLACIEKKLDAHIEKTT---VRNVVKSS 298
           L D+K+   + + ++++ HL+   Q +DN +  +  + K L   +E TT    +NVV  +
Sbjct: 113 LSDLKSRIVEVSERNMRYHLVIADQVIDNHMNFMVALNKVLSRSVEGTTDNWTQNVVTWA 172

Query: 299 RLEELS 304
              E S
Sbjct: 173 EAPEES 178


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 87  VPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
           VP  +PP    +P +Y +   +GHR K +
Sbjct: 363 VPLRVPPDSPLAPEWYRLVGKEGHRDKGE 391


>03_01_0118 -
           929956-929988,930059-930145,930230-930331,930515-930610,
           931053-931148,931502-931564,931565-931630,931716-931790,
           931906-932077,932116-932285
          Length = 319

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 199 VSVQKIRNVD--GDTEIKALVMNESDINTLAESIQEPILNALKGCLGDI 245
           V+V K R ++  G  + + + ++  +IN + E+++ P+LN L   LG I
Sbjct: 89  VAVSKARGMELAGAIDSQCVGLDAGEINGMEEALEIPVLNDLTMVLGSI 137


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,451
Number of Sequences: 37544
Number of extensions: 290789
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 9
length of query: 379
length of database: 14,793,348
effective HSP length: 83
effective length of query: 296
effective length of database: 11,677,196
effective search space: 3456450016
effective search space used: 3456450016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 61 (28.7 bits)