GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001846-TA|BGIBMGA001846-PA|undefined
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       31   1.2  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               29   6.3  
SB_42014| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)           29   8.3  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.3  
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)                29   8.3  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 146 NANEFLTPSESNTLDDLQLNQSMTCTDSETFDA------KYKKDKENTTVHSKIKNINSV 199
           N   FL    SN+ D L   + M+ TD   FD+      K K DKEN  +H     I   
Sbjct: 99  NKEIFLRELISNSSDALDKIRLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMT 158

Query: 200 SVQKIRNV 207
             + I+N+
Sbjct: 159 KEELIKNL 166


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 167 SMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTEIKALVMNESDINTL 226
           S+ C D +T D   +++ ++  ++    +INSV+     +++ D + + L +N      L
Sbjct: 147 SVKCVDDDTTDESTEEEDDDELLYMGCIDINSVN-----SINSDWK-EELEINGKKATFL 200

Query: 227 AESIQEPILNALKGCLGDIKALACKDNMKSLQTHLLCNTQKLDNIL--VTLACIEK---- 280
            ++  +   N +       K+L  KD +KS Q+ L C +  +  IL    L C  K    
Sbjct: 201 LDTGAK--CNVMS--YNTYKSLGMKDVIKSTQSQLKCYSGHVIPILGCAQLTCKHKDKSL 256

Query: 281 KLDAHIEKTTVRNVVKSSRLEELS 304
           K+  +I K  V +V+     ++L+
Sbjct: 257 KIKCYIAKNKVFSVLSGQACKDLN 280


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 161 DLQLNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVS 200
           DLQL+  +  TD  T D+ Y+ + E     S +  I+ VS
Sbjct: 64  DLQLSDKLAKTDKSTNDSTYEVNMEEIETSSLVSKIDEVS 103


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 19/136 (13%)

Query: 177 DAKYKKDKENTTVHSKIKNINSVSV------QKIRNVDGDTEIKALVMNESDINTLAESI 230
           DAK   +K  T    ++ +I+ V        Q+I  +  + E  AL MN+ D +TLAE+ 
Sbjct: 246 DAKTALNKVTTNRDMRVSDISRVQCDIKEYQQRITALSNERERVALEMNKRDTSTLAEA- 304

Query: 231 QEPILNALKGCLGDIKAL-ACKDNMKSLQTHLLCNTQKLDNILVTLACIEKKLDAHIEKT 289
               + +L    G ++ L A +  M+      L     L+N L       K++   ++ T
Sbjct: 305 HGNAMASLIDTKGTMRRLQATQTTMEKTLEERLKEVDSLNNQL-------KEIKTSVQNT 357

Query: 290 TVRNVVKSSRLEELSK 305
           T  N    SRL+ +++
Sbjct: 358 TAEN----SRLQHMAE 369


>SB_42014| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
          Length = 1007

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 184 KENTTVHSKIKNINSVSVQKIRNVDGDTEIKALVMNESDINTLAESIQEPILNALKGCLG 243
           +E+T +H +++  N    Q+I  +  + E+    +  ++     E+ +E  L ALK  L 
Sbjct: 508 RESTEIHQQLREKNQEQQQRIEELTCELELAYQEIKNTEERKSVENSEE--LIALKADLE 565

Query: 244 DIKALACKDNMKSLQTHLLCNTQKLDNILVTLACIEKKLDAHIEKTTVRNVVKSSRLEEL 303
             K     DN+K L  +      +L+  + TL    K L   +++T  ++   ++   EL
Sbjct: 566 RAK----YDNLK-LANYRKEENDRLNETIRTLQDEVKSLTTRLDETKQKSEELAACKSEL 620

Query: 304 SK 305
            K
Sbjct: 621 KK 622


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 177  DAKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTEIKALVMNESDINTLAESIQEPILN 236
            +A+  +  E+  V S++  +  +      N+ GDT  K L + + D+N   + + +  +N
Sbjct: 941  EAEALQKSESLEVESQVTGLEFLETC-FTNLHGDTIKKTLALCDGDVNRAVQELLKSDVN 999

Query: 237  ALK--GCLGDIKALACKDNMKSLQTHLLC 263
             L   G      A    DN+K    H  C
Sbjct: 1000 LLSNPGAESLDDASNTSDNVKDFSYHDSC 1028


>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
          Length = 292

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 5   WF--RNLKVVD-GIRLDNYFLYKHDLYRAVYIHRKYLKY 40
           WF  + + V D G R D   L+++D+ R +YIHR+ L Y
Sbjct: 251 WFALQRVSVGDSGTRHDWQNLHRYDVSRHLYIHRRALSY 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,764,239
Number of Sequences: 59808
Number of extensions: 384546
Number of successful extensions: 1121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 8
length of query: 379
length of database: 16,821,457
effective HSP length: 83
effective length of query: 296
effective length of database: 11,857,393
effective search space: 3509788328
effective search space used: 3509788328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 61 (28.7 bits)