GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001846-TA|BGIBMGA001846-PA|undefined
         (379 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr...    34   0.19 
Z46242-14|CAA86324.2|  442|Caenorhabditis elegans Hypothetical p...    33   0.25 
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U29537-1|AAK31507.1|  610|Caenorhabditis elegans Temporarily ass...    29   5.4  
AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical ...    29   5.4  
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
            F35G12.8 protein.
          Length = 1549

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 200  SVQKIRNVDGDTEIKALVMNESDINTLAESIQEPILNALKGCLGDIKALACKDNMKSLQT 259
            + +   NVDG+  +   ++++  IN ++    E +   LK C   ++AL  K ++ S++ 
Sbjct: 1123 NTESYENVDGEDRVPVELLSDEKINEISSRDAEEMQMKLKVCEQQVEALKAKVDISSIKA 1182

Query: 260  HLLCNTQKLDNIL-VTLAC-IEKKLDAHIEKTTVRNVVKSSRLEE 302
            ++    Q  + ++ +T+A  + +K +  +++      +K  RLEE
Sbjct: 1183 YVDKVKQYNEQVIKLTIATEVHRKHNQELQR------IKQMRLEE 1221


>Z46242-14|CAA86324.2|  442|Caenorhabditis elegans Hypothetical
           protein F35G12.1a protein.
          Length = 442

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 13/100 (13%)

Query: 179 KYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTEIKALVMNESDINTLAESIQEPILNAL 238
           K +KD  + T HS +  I       IRN+ G++E  + +MNE  +N +++ I E  +N +
Sbjct: 272 KLQKDVPSVTTHSTLSPIPGFRPWLIRNLKGNSEYPS-IMNEKVVNWISD-ISEREMNEV 329

Query: 239 KGCLGDIKALA----CKDNMKSLQ-------THLLCNTQK 267
           +     +K ++     K+ + ++Q        H LCN ++
Sbjct: 330 EATETLLKVISNEKTKKEQLNAIQHILMYACAHYLCNAKR 369


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 146 NANEFLTPSESNTLDDLQLNQSMTCTDSETFDAKYKKDKENTT-VHSKIKNINSVSVQKI 204
           N  E +T +  N ++++   + +     E  +A ++  KE       + KN N+V  +K 
Sbjct: 654 NPEENMTEAIENEVEEVDKQEQLPVPQPEEPEAAHEAPKEEKKKTRKRNKNKNNVIAEKF 713

Query: 205 RNVDGDTEIKALVMNES 221
                D+ +KA  +N S
Sbjct: 714 GQGMTDSRVKAYGLNPS 730


>U29537-1|AAK31507.1|  610|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 223 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 85  SLVPAAIPPSRDKSPVYYTIKASKGHRKKSK 115
           SLVP  I  + DKSP   T  +S G R K K
Sbjct: 492 SLVPVTISVASDKSPTTSTPSSSSGLRSKRK 522


>AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical
           protein F40H3.1a protein.
          Length = 496

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 148 NEFLTPSESNTLDD-LQLNQSMTCTDSETFDAKYKKDKENTTVHSKIKNINSVSVQKIRN 206
           NE L+PS+ + LDD L+L       +SE F    ++ +E   V S    I  +  + I  
Sbjct: 43  NEELSPSQKDFLDDFLELQNDSDLEESEDF---IQESQE--VVSSVDDEIKVILNEIINQ 97

Query: 207 VDGDTE-IKALVMNESDINTLAESIQ 231
           V+ +T+ I  ++++  D     ESI+
Sbjct: 98  VETETQLIPKIIIHSDDAEVPEESIE 123


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 178 AKYKKDKENTTVHSKIKNINSVSVQKIRNVDGDTEIKALVMNESDIN--TLAESIQEPIL 235
           A ++K+ EN    ++I      S++K    + +    A  +NE  IN  TL+E + E + 
Sbjct: 39  ANFEKENENLADENEILKTRIASLEKDVKQEKNATKMAKSLNEETINELTLSEDLIESLK 98

Query: 236 NALKGCLGDIKALACKDNM--KSLQTHLLCNTQKLDNILVTLACIEKKLDAHIEKTTVRN 293
              +    ++K      N   K          ++   +L+T+  +E     H ++T + N
Sbjct: 99  KQFQASKIELKEEILSKNKVEKDYSNDKRYFLEREQYLLITMESMESGKLEHEQQTEIMN 158


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,061,622
Number of Sequences: 27539
Number of extensions: 297823
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 6
length of query: 379
length of database: 12,573,161
effective HSP length: 83
effective length of query: 296
effective length of database: 10,287,424
effective search space: 3045077504
effective search space used: 3045077504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 60 (28.3 bits)