Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001845-TA|BGIBMGA001845-PA|undefined
         (236 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   1.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   1.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.6  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 166 VGGWCRAAEWSAKHVAQCATPWAIR 190
           +G WC   EWS+   A+ A+  A R
Sbjct: 116 MGKWCPRREWSSPPDARAASDAARR 140



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 78  LASAKPDQRGWWLYWRDWRS 97
           L ++ PD  G W   R+W S
Sbjct: 108 LDASDPDAMGKWCPRREWSS 127


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 156 LCEVCARAVRVGGWCRA-AEWSAK 178
           LC+VC   +    WC    +WS++
Sbjct: 315 LCDVCYSTIGTVSWCELNFDWSSQ 338


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 166 VGGWCRAAEWSAKHVAQCATPWAIR 190
           +G WC   EWS+   A+ A+  A R
Sbjct: 272 MGKWCPRREWSSPPDARAASDAARR 296



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 78  LASAKPDQRGWWLYWRDWRS 97
           L ++ PD  G W   R+W S
Sbjct: 264 LDASDPDAMGKWCPRREWSS 283


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.136    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,330
Number of Sequences: 317
Number of extensions: 1498
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 236
length of database: 114,650
effective HSP length: 55
effective length of query: 181
effective length of database: 97,215
effective search space: 17595915
effective search space used: 17595915
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)