Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001845-TA|BGIBMGA001845-PA|undefined
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.0  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   4.2  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   4.2  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   9.6  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 28  SLDEERRDDCQGHWRGPYLQGEEEERG 54
           S D E  ++  GH  G  L GE EE G
Sbjct: 220 SADSESEEEVDGHSEGKELAGESEEEG 246


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 87  GWWLYWRDWRSLERAARRFRETKARARLAERAEHIPLLSLDEVEFEDIMQE 137
           GW  +   W + +RAA+R    +   ++   AEH    S+DE+     ++E
Sbjct: 88  GWGHFSTVWLAYDRAAKR----RVALKVVRSAEHYRETSIDEIRILQKIRE 134


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 76  CMLASAKPDQRGWWLYWRDWRSLERAARRFRETKARARLAERAEHIPLLSLDEVEFEDIM 135
           C     + D +  W   R+W S++   ++  + +      E+ E IP + L  +  +D  
Sbjct: 205 CKFLHMREDYKAGWQLDREWDSVQEKYKKGAKLEEGMVKNEKKEDIPFVCL--ICKKDYR 262

Query: 136 QELCQACAH 144
             +   C H
Sbjct: 263 SPIATTCGH 271


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 90  LYWRDWRSLERAARRFRETKARARLAERAEHIPL 123
           +Y+  W++  R A R  E   ++R  E   H P+
Sbjct: 95  IYYYRWKAARRIASREHEPLLQSRSLEEGLHAPI 128


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.136    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,765
Number of Sequences: 5004
Number of extensions: 28294
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 4
length of query: 236
length of database: 2,362,478
effective HSP length: 71
effective length of query: 165
effective length of database: 2,007,194
effective search space: 331187010
effective search space used: 331187010
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 52 (25.0 bits)