Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001845-TA|BGIBMGA001845-PA|undefined
         (236 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50450.1 68418.m06247 zinc finger (MYND type) family protein ...    31   0.90 
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi...    29   2.1  
At3g09510.1 68416.m01130 hypothetical protein                          29   3.6  
At5g21030.1 68418.m02501 PAZ domain-containing protein / piwi do...    27   8.4  
At5g17900.1 68418.m02099 expressed protein                             27   8.4  

>At5g50450.1 68418.m06247 zinc finger (MYND type) family protein
           contains Pfam profile PF01753: MYND finger
          Length = 336

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 157 CEVCARAVRVGGWCRAAEWSAKHVAQCATP 186
           C VC +       C+A +W AKH  +C TP
Sbjct: 279 CSVCGKVNYCSRGCQALDWRAKHKVEC-TP 307


>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 102 ARRFRETKARARLAERAEHIPLLSLDEVEFEDIMQELCQACAHVEQRALVVLAFLCEVCA 161
           AR+F  T+ R  +++R   I +  + E+E +  M    Q C  VE+ A V  A LC    
Sbjct: 480 ARKFLITELRELVSDR-NIIRVKRMGELEEKPFMTACRQRCT-VEEEAQVQYAMLCSKWQ 537

Query: 162 RAVRVGGW 169
             V+   W
Sbjct: 538 EKVKDSAW 545


>At3g09510.1 68416.m01130 hypothetical protein
          Length = 484

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 89  WLYWRDWRSLERAA-RRFRETKARARLAERAE 119
           WL WR W++       +FRE+ ++  L+ +AE
Sbjct: 267 WLIWRIWKARNNVVFNKFRESPSKTVLSAKAE 298


>At5g21030.1 68418.m02501 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 850

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 117 RAEHIPLLSLDEVEFE-DIMQELCQACAHVEQRALVVLAFLCEVC 160
           R  H  +L  DE+ F+ D +QEL  + ++V QR+   ++ +  +C
Sbjct: 754 RPTHYHVL-YDEIGFDTDQLQELVHSLSYVYQRSTTAISLVAPIC 797


>At5g17900.1 68418.m02099 expressed protein
          Length = 435

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 94  DWRSLERAARRFRETKARARLAERAEHIPLLSLDEVEFEDIMQE 137
           D  +LE   RR RE   R R  E A  +PL   DE++ E+  +E
Sbjct: 121 DEDALEERRRRIREKNLR-RAQEEAALLPLEEEDEIQEEEEEEE 163


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.136    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,873,946
Number of Sequences: 28952
Number of extensions: 169228
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 5
length of query: 236
length of database: 12,070,560
effective HSP length: 79
effective length of query: 157
effective length of database: 9,783,352
effective search space: 1535986264
effective search space used: 1535986264
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)