GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001845-TA|BGIBMGA001845-PA|undefined
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179           30   1.9  
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731     29   3.3  
01_06_1034 + 33962813-33963802                                         29   3.3  
11_06_0289 - 21969248-21973516                                         29   4.3  
11_06_0185 + 21018045-21022307                                         29   4.3  
11_06_0284 + 21909758-21913645                                         28   5.7  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   5.7  

>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
          Length = 312

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 136 QELCQACAHVEQRALVVLAFLCEVCARAVRVGGWCRAAEWSAKHVAQCATPWAIRHGGW 194
           +E C+    +++      A + EVC +AV  G W  AA      V  C    A+  G W
Sbjct: 94  EEACRLAVVIQKAVAAATAAVAEVCKKAVGGGSWDAAAA-----VEVCKKGAAVGGGSW 147


>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
          Length = 369

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 157 CEVCARAVRVGGWCRAAEWSAKHVAQC 183
           C VC  A      C+A +W   H AQC
Sbjct: 329 CSVCGAANYCSRACQALDWKRAHKAQC 355


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 157 CEVCARAVRVGGWCRAAEWSAKHV--AQCATPWAIRH 191
           C VC     VG    A E   KH+  A+C  PW ++H
Sbjct: 192 CPVCTDKFEVG--TEAREMPCKHLYHAECIIPWLVQH 226


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 88  WWLYW--RDWRSLERAARRFRETKARAR 113
           WW+YW  R   +  RAA + R+ K RAR
Sbjct: 102 WWVYWSLRKMVAQHRAAIQLRQLKDRAR 129


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 88  WWLYW--RDWRSLERAARRFRETKARAR 113
           WW+YW  R   +  RAA + R+ K RAR
Sbjct: 102 WWVYWSLRKMVAQHRAAIQLRQLKDRAR 129


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 85  QRG-WWLYW--RDWRSLERAARRFRETKARAR 113
           QRG WW+YW  R   +  RAA +  + K RAR
Sbjct: 99  QRGLWWVYWSMRKMVAQHRAAVQLSQLKDRAR 130


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 84  DQRGWWLYWRDWRSLERAA 102
           D+  WWL WR W    RAA
Sbjct: 283 DRLVWWLGWRQWPLFTRAA 301


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.136    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,643,029
Number of Sequences: 37544
Number of extensions: 245464
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 8
length of query: 236
length of database: 14,793,348
effective HSP length: 80
effective length of query: 156
effective length of database: 11,789,828
effective search space: 1839213168
effective search space used: 1839213168
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)