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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001845-TA|BGIBMGA001845-PA|undefined
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)               33   0.21 
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)                   33   0.21 
SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)                     29   3.3  
SB_11044| Best HMM Match : FMO-like (HMM E-Value=3.4)                  29   4.4  
SB_8725| Best HMM Match : Crl (HMM E-Value=2.1)                        28   7.7  
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)                  28   7.7  
SB_51614| Best HMM Match : ROK (HMM E-Value=7)                         28   7.7  
SB_31348| Best HMM Match : ERM (HMM E-Value=0)                         28   7.7  
SB_3898| Best HMM Match : CITED (HMM E-Value=1.5)                      28   7.7  

>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
          Length = 294

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 104 RFRETKARARLAERAEHIPLLSLDEVEFEDIMQELCQACAHVEQRALVVLAFL-CEVCAR 162
           ++ E K R  +A R  +I  + L E  F  ++ +  Q+ +H  Q  + +LA L C  C  
Sbjct: 37  KYTEEKGRHTIAARDINIGDVLLVEKPFASVLLQE-QSKSHCHQCFVHILAPLPCSYCTT 95

Query: 163 AVRVGGWCRAAEWSAKHVAQC 183
                  C    W A H A+C
Sbjct: 96  VRYCSEKCAKESWDAYHYAEC 116


>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
          Length = 357

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 104 RFRETKARARLAERAEHIPLLSLDEVEFEDIMQELCQACAHVEQRALVVLAFL-CEVCAR 162
           ++ E K R  +A R  +I  + L E  F  ++ +  Q+ +H  Q  + +LA L C  C  
Sbjct: 241 KYTEEKGRHTIAARDINIGDVLLVEKPFASVLLQE-QSKSHCHQCFVHILAPLPCSYCTT 299

Query: 163 AVRVGGWCRAAEWSAKHVAQC 183
                  C    W A H A+C
Sbjct: 300 VRYCSEKCAKESWDAYHYAEC 320


>SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 73  PPPCMLASAKPDQRGWWLYWRDWRSLERAARRFRETKARARLAERAEH 120
           PP C++  +  D  GWW+   + +  ++AA     T A A +AE  +H
Sbjct: 370 PPSCLIGLSM-DWEGWWMLDEEAKEAKKAA-----TAAGASIAEHIKH 411


>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
          Length = 1617

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 75  PC-MLASAKPDQRGWWLYWRDWRSLERAARRFRETKARARL---AERAEHIPLLSLDEVE 130
           PC +L   +    G  +YW  W+ L    RR  E   +A +   A  AEHI     ++V+
Sbjct: 69  PCRLLEEERQFTSGLSMYWEGWQMLNEVPRRKEEETKKAAVAAGASIAEHIKHAIAEQVK 128


>SB_11044| Best HMM Match : FMO-like (HMM E-Value=3.4)
          Length = 781

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 92  WRDWRSLERAARRFRETK--ARARLAERAEHIPLLSLDEVEFE 132
           W  WR L   A+   ETK  A A  A  AEHI     ++V+ E
Sbjct: 175 WEGWRMLNEEAKEAEETKKAATAAGAYIAEHIKHAIAEQVKHE 217


>SB_8725| Best HMM Match : Crl (HMM E-Value=2.1)
          Length = 221

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 92  WRDWRSLERAARRFRETK--ARARLAERAEHIPLLSLDEVE 130
           W  WR L   A+   ETK  A A  A  AEHI     +E++
Sbjct: 90  WEGWRMLNEEAKEAEETKKAATAAGAVIAEHIKHAIAEEIK 130


>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
          Length = 599

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 89  WLYWRDWRSLERAARRFRETKARARLAERAEHIPLLSLDEVEFEDIMQELCQACA 143
           W  ++DWR  ++  + FR+  AR +  E+       + ++   EDIM ++  A A
Sbjct: 42  WHEYQDWRKCQKPMKDFRDCMARQQAQEKEG-----NNNKTPCEDIMSDIPHAWA 91


>SB_51614| Best HMM Match : ROK (HMM E-Value=7)
          Length = 727

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 92  WRDWRSLERAARRFRETK--ARARLAERAEHI 121
           W  WR L   A+   ETK  A A  A  AEHI
Sbjct: 114 WESWRMLNEEAKEAEETKKAATAAGASIAEHI 145


>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
          Length = 665

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 10  VQPLEEYDGPRAPLIRQVSLDEERRDDCQGHW 41
           ++P   YD  +AP++R ++     RD C  H+
Sbjct: 394 IKPGSSYDDYKAPMVRGINCKHYSRDTCLMHF 425


>SB_3898| Best HMM Match : CITED (HMM E-Value=1.5)
          Length = 1166

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 92  WRDWRSLERAARRFRETK--ARARLAERAEHI 121
           W  WR L   A+   ETK  A A  A  AEHI
Sbjct: 114 WESWRMLNEEAKEAEETKKAATAAGASIAEHI 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.136    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,030,019
Number of Sequences: 59808
Number of extensions: 244257
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 10
length of query: 236
length of database: 16,821,457
effective HSP length: 80
effective length of query: 156
effective length of database: 12,036,817
effective search space: 1877743452
effective search space used: 1877743452
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)

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