GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001845-TA|BGIBMGA001845-PA|undefined
         (236 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   2.2  
AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protei...    29   2.2  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   2.2  
Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z50070-8|CAA90397.1|  263|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific ...    28   6.7  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   8.9  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   8.9  

>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 103  RRFRETKARARLAERAEHIPLLSLDEVEFEDIMQEL 138
            RR+R +K  +RL    +H PLL   +    + M++L
Sbjct: 3934 RRYRSSKEHSRLVTNGQHAPLLEEQKAGMNENMRQL 3969


>AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protein
           805, isoform c protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 103 RRFRETKARARLAERAEHIPLLSLDEVEFEDIMQEL 138
           RR+R +K  +RL    +H PLL   +    + M++L
Sbjct: 43  RRYRSSKEHSRLVTNGQHAPLLEEQKAGMNENMRQL 78


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 103  RRFRETKARARLAERAEHIPLLSLDEVEFEDIMQEL 138
            RR+R +K  +RL    +H PLL   +    + M++L
Sbjct: 3934 RRYRSSKEHSRLVTNGQHAPLLEEQKAGMNENMRQL 3969


>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 91  YWRD---WRSLERAARRFRETKARARLAERAEHIPLLSLDEVEFEDIMQELCQACAHVEQ 147
           YW+D   WR LE   RR  E   RA  A +A   P+       FED  +  C    H ++
Sbjct: 581 YWQDIEEWRVLEAEVRRRDEEAFRAARARKAAS-PVREESCDVFEDPNEPTCS--QHYDR 637

Query: 148 RALVVL 153
             L+ L
Sbjct: 638 ENLITL 643


>Z50070-8|CAA90397.1|  263|Caenorhabditis elegans Hypothetical
           protein F43G6.8 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 104 RFRETKARARLAERAEHIPLLSLDEVEFEDIMQELCQACAH-------VEQRALVVLAFL 156
           R R T  R ++ E AE +      EV  E  + +LC+ CAH          R LV    L
Sbjct: 165 RKRTTFYRKKMLELAEQLQF-EQQEVTGETPLWKLCEICAHQFSHSDEYVPRVLVCGHTL 223

Query: 157 CEVCARAVRVGGWCR 171
           C  C   + VG   R
Sbjct: 224 CTSCIEKLDVGDGIR 238


>U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific
           family, class rprotein 2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 111 RARLAERAEHIPLLSLDEV----EFEDIMQELCQACAHVEQRALVVLAFLCEV 159
           R  +A  +  + + S+D+V    E  DI QE+C   + + +  +VV+   C+V
Sbjct: 81  RLSIASASAFLLVFSVDDVTSFKEMSDIWQEICSRRSDLNELPIVVVGNKCDV 133


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 104  RFRETKARARLAERAEHIPLLSLDEVEFEDIMQEL 138
            R+R +K  +RL    +H PLL   +    + M++L
Sbjct: 3938 RYRSSKEHSRLVTNGQHAPLLEEQKAGMNENMRQL 3972


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 104  RFRETKARARLAERAEHIPLLSLDEVEFEDIMQEL 138
            R+R +K  +RL    +H PLL   +    + M++L
Sbjct: 3938 RYRSSKEHSRLVTNGQHAPLLEEQKAGMNENMRQL 3972


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.136    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,022,634
Number of Sequences: 27539
Number of extensions: 176188
Number of successful extensions: 520
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 8
length of query: 236
length of database: 12,573,161
effective HSP length: 79
effective length of query: 157
effective length of database: 10,397,580
effective search space: 1632420060
effective search space used: 1632420060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)