Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001844-TA|BGIBMGA001844-PA|undefined
         (54 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    23   3.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   4.9  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 14  ITEALDVNKKRYSGNRRLGPDSGIWSDHRGK 44
           +T + + NKK    N++  P   +W+   GK
Sbjct: 695 VTASSETNKKSQKINKKASPRVSLWTKLFGK 725


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 20  VNKKRYSGNRRLGPDSGIW 38
           +N  RY   RR   DSG+W
Sbjct: 838 MNANRYDPQRRERIDSGLW 856


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,014
Number of Sequences: 5004
Number of extensions: 5334
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 2,362,478
effective HSP length: 35
effective length of query: 19
effective length of database: 2,187,338
effective search space: 41559422
effective search space used: 41559422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)