Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001844-TA|BGIBMGA001844-PA|undefined
         (54 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    27   1.5  
At1g50750.1 68414.m05707 expressed protein                             27   2.0  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    26   3.5  
At2g27285.1 68415.m03279 expressed protein weak similarity to ma...    26   3.5  
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    25   8.1  

>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 6   QLLLRQCNITEALDVNKKRYSGNRRLGPD 34
           +LLLR C++ E+LD+N+   S +  L PD
Sbjct: 124 ELLLRSCSVKESLDLNE---SSSNPLVPD 149


>At1g50750.1 68414.m05707 expressed protein
          Length = 816

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 13  NITEALDVNKKRYSGNRRLGPDSGIWSDHRGKVTLAQSD 51
           +I + L +NKK+YS  R  G D+   S+  GK++  ++D
Sbjct: 511 SIAQFLRLNKKKYSDVRNSGRDA---SEPLGKISRVEAD 546


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 9   LRQCNITEALDVNKKRYSGNRRLGPDSGIW 38
           L +C++  +L++++ R+SGN      SGIW
Sbjct: 193 LFRCSVLNSLNLSRNRFSGNPSF--VSGIW 220


>At2g27285.1 68415.m03279 expressed protein weak similarity to maebl
           (GI:20087019) [Plasmodium falciparum], chimeric
           erythrocyte-binding protein MAEBL (GI:22086284)
           [Plasmodium falciparum]
          Length = 323

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 16  EALDVNKKRYSGNRRLGPDSGIWSDHRGK 44
           E   V KKR S  + + PDSG +   R K
Sbjct: 224 EVTRVEKKRKSPEKEVSPDSGEFGSSRSK 252


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium
          subunit family protein contains Pfam profile: PF00928
          adaptor complexes medium subunit family
          Length = 428

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 37 IWSDHRGKVTLAQSD 51
          +W D+RG VT AQ++
Sbjct: 19 VWRDYRGDVTAAQAE 33


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,518
Number of Sequences: 28952
Number of extensions: 31462
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 5
length of query: 54
length of database: 12,070,560
effective HSP length: 35
effective length of query: 19
effective length of database: 11,057,240
effective search space: 210087560
effective search space used: 210087560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)