GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001844-TA|BGIBMGA001844-PA|undefined
         (54 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    26   3.2  
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701...    26   3.2  
01_06_0241 - 27813076-27813622,27813695-27814125                       25   9.8  

>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 7   LLLRQCNITEALDVNKKRYSGNRRLGPDSGIWSDH 41
           L L+ C  T+ L + ++ +S   RLG D  ++  H
Sbjct: 127 LALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAH 161


>01_07_0344 -
           42869465-42869502,42869597-42869771,42869923-42870117,
           42870678-42870788,42870899-42871111,42871551-42871658,
           42871732-42871873,42872150-42873449,42874032-42874085,
           42874491-42874923
          Length = 922

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 12  CNITEALDVNKKRYSGNRRLGPDSGIWSDHR 42
           CN T+ L  +K +Y  +R  G  SG+ SD +
Sbjct: 195 CNGTDLLSSSKVQYGLHRETGAISGLHSDSK 225


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 9   LRQCNITEALDVNKKRYSGNRRLGPDSGIWSDH 41
           LR+ N+ +   V K  Y+ ++  GP +  W ++
Sbjct: 143 LRKLNLVQCTPVEKTLYASHQLRGPAADWWENY 175


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,749
Number of Sequences: 37544
Number of extensions: 40361
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 14,793,348
effective HSP length: 35
effective length of query: 19
effective length of database: 13,479,308
effective search space: 256106852
effective search space used: 256106852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)