GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001844-TA|BGIBMGA001844-PA|undefined
         (54 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           25   8.6  

>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 4    KTQLLLRQCNITEALDVN---KKRYSGNRRLGPDSGIWS 39
            K+   L+   I EA+ VN   KK+ SG+ RL  DS +WS
Sbjct: 1339 KSSTRLKSHGIDEAM-VNFPDKKKLSGHERLRYDSLVWS 1376


>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 23   KRYSGNRRLGPDSGIWSDHR 42
            + Y  NR   PD G+W +HR
Sbjct: 986  RSYVKNRIAKPDLGVWVNHR 1005


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,924
Number of Sequences: 59808
Number of extensions: 45074
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 16,821,457
effective HSP length: 34
effective length of query: 20
effective length of database: 14,787,985
effective search space: 295759700
effective search space used: 295759700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)