GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001844-TA|BGIBMGA001844-PA|undefined
         (54 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    27   2.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    26   2.8  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    26   2.8  

>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/39 (23%), Positives = 22/39 (56%)

Query: 13  NITEALDVNKKRYSGNRRLGPDSGIWSDHRGKVTLAQSD 51
           N++   D +K++++G  R+G     W++    V ++ +D
Sbjct: 507 NVSSVFDQDKQKWAGQNRIGLQDTQWAELDKAVAVSDTD 545


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9   LRQCNITEALDVNKKRYSGNRRLGPDSGIWSDHRGKVTLAQSDA 52
           LR+C++    + N   YSG R      G +S+++GKV +   +A
Sbjct: 372 LRRCDLIRRFNANVP-YSGLRFSKSHEGFFSENKGKVIVNAIEA 414


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9   LRQCNITEALDVNKKRYSGNRRLGPDSGIWSDHRGKVTLAQSDA 52
           LR+C++    + N   YSG R      G +S+++GKV +   +A
Sbjct: 372 LRRCDLIRRFNANVP-YSGLRFSKSHEGFFSENKGKVIVNAIEA 414


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9   LRQCNITEALDVNKKRYSGNRRLGPDSGIWSDHRGKVTLAQSDA 52
           LR+C++    + N   YSG R      G +S+++GKV +   +A
Sbjct: 372 LRRCDLIRRFNANVP-YSGLRFSKSHEGFFSENKGKVIVNAIEA 414


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,829
Number of Sequences: 27539
Number of extensions: 30531
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 4
length of query: 54
length of database: 12,573,161
effective HSP length: 35
effective length of query: 19
effective length of database: 11,609,296
effective search space: 220576624
effective search space used: 220576624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)