GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001843-TA|BGIBMGA001843-PA|IPR013026|Tetratricopeptide
region
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    32   0.087
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    32   0.087
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    31   0.15 
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   4.3  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   5.7  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.7  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 31.9 bits (69), Expect = 0.087
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 180 PHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIP 229
           P I S+N++     L P V   D L  ENT  A  + +K+ + ND + +P
Sbjct: 524 PSIGSRNQSTPST-LAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVP 572


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 31.9 bits (69), Expect = 0.087
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 62   HPECVAAHTNLGLALIAKKKFVAALTCLQRAV 93
            HP  + + TNL L L   +KF+ +  CLQ AV
Sbjct: 1064 HPNTINSFTNLSLMLHGSEKFIQSQKCLQIAV 1095


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 190 SLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDK 225
           SL   P     YD L+DE  E A +E  K+++AN++
Sbjct: 300 SLFGTPASSSSYDALFDEEVEKAIEEETKSVQANEE 335



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 196 PLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEED 237
           P++L  D LY E+ +DA  + +KN E N      VMN  E++
Sbjct: 12  PMLLPSDGLYPEDDDDADMDQDKNPEEN------VMNEKEDE 47


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 76  LIAKKKFVAALTCLQRAVWAAP 97
           LI+K+++  AL C +RAV A+P
Sbjct: 315 LISKERYDLALICAKRAVHASP 336


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 206 DENTEDAKDEGNKNIEANDK 225
           D+ TEDAKD  N++I  + K
Sbjct: 106 DKETEDAKDSSNQDISNDQK 125


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 66  VAAHTNLGLALIAKKKFVAALTCLQRAVWAAPL 98
           VAAHT+ G  ++A+     A   + +A++ +P+
Sbjct: 300 VAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPI 332


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,389
Number of Sequences: 5004
Number of extensions: 25491
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 7
length of query: 243
length of database: 2,362,478
effective HSP length: 71
effective length of query: 172
effective length of database: 2,007,194
effective search space: 345237368
effective search space used: 345237368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)