GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001843-TA|BGIBMGA001843-PA|IPR013026|Tetratricopeptide
region
         (243 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    30   1.5  
01_06_1726 - 39461451-39461791,39462127-39462183,39462527-394626...    30   2.0  
09_04_0105 - 14633097-14635529                                         29   4.5  
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967...    28   6.0  
03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182...    28   7.9  

>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 66  VAAHTNLGLALIAKKKFVAALTCLQRAVWAAPL 98
           VAAHT+ G  ++A+  F  A     RAV+ AP+
Sbjct: 407 VAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 439


>01_06_1726 -
           39461451-39461791,39462127-39462183,39462527-39462674,
           39462775-39463010,39463025-39463059,39463364-39463497
          Length = 316

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 55  LKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPL 98
           L  +L   P    A+ NLGL  IA+ ++  A++C ++++ + PL
Sbjct: 255 LLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCFEKSLQSDPL 298


>09_04_0105 - 14633097-14635529
          Length = 810

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 66  VAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLNG 100
           ++ +TN G   +++K F  A T   R++W+A ++G
Sbjct: 313 ISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISG 347


>02_03_0285 -
           17296164-17296203,17296406-17296524,17296572-17296742,
           17298878-17298985,17299783-17299905,17300057-17300143,
           17300765-17300884
          Length = 255

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEAND 224
           DP++  +NR   + +L P+      +YD + +      NKN++A +
Sbjct: 104 DPNVPDENRRKDVEILLPVTSRIPSVYDWSVDGIITYVNKNVQATN 149


>03_05_0055 -
           20316184-20317349,20317786-20317926,20318097-20318222,
           20318382-20318429,20318536-20318640,20318746-20318890
          Length = 576

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 137 LSPQDPLIRMNMAGRHAR--TGRLSQXXXXXXXXXXXXRGDDTPDPHINSKNRTASLVVL 194
           LS  DP   M M   H +   G  S             +G+D    H   K++     V 
Sbjct: 113 LSEPDPTSGM-MEPTHNKDGNGHKSHQETLGGGGDGESKGNDEEGEHAEQKHK-----VT 166

Query: 195 PPLVLGYDELYD--ENTEDAKDEGNKNIEANDK 225
            P V  Y  ++D  E+TE+AK EG  N++   K
Sbjct: 167 LPTVSNYT-IHDAAEDTENAKQEGMNNVQQGSK 198


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,766,128
Number of Sequences: 37544
Number of extensions: 157923
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 14,793,348
effective HSP length: 80
effective length of query: 163
effective length of database: 11,789,828
effective search space: 1921741964
effective search space used: 1921741964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)