Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001843-TA|BGIBMGA001843-PA|IPR013026|Tetratricopeptide
region
(243 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC027624-1|AAH27624.1| 519|Homo sapiens Bardet-Biedl syndrome 4... 46 9e-05
BC008923-1|AAH08923.2| 461|Homo sapiens BBS4 protein protein. 46 9e-05
AY457143-1|AAS13441.1| 527|Homo sapiens Bardet-Biedl syndrome 4... 46 9e-05
AK075321-1|BAC11547.1| 519|Homo sapiens protein ( Homo sapiens ... 46 9e-05
AF359281-1|AAK58868.1| 519|Homo sapiens Bardet-Biedl syndrome t... 46 9e-05
BC129935-1|AAI29936.1| 1597|Homo sapiens PB1 protein protein. 32 2.1
BC129934-1|AAI29935.1| 1652|Homo sapiens PB1 protein protein. 32 2.1
BC115011-1|AAI15012.1| 1540|Homo sapiens PB1 protein protein. 32 2.1
BC115010-1|AAI15011.1| 1615|Homo sapiens PB1 protein protein. 32 2.1
BC115009-1|AAI15010.1| 1454|Homo sapiens PB1 protein protein. 32 2.1
AY281068-1|AAP34197.1| 1689|Homo sapiens polybromo-1D protein. 32 2.1
AF225872-1|AAG48941.1| 1582|Homo sapiens polybromo-1 protein. 32 2.1
AF225870-1|AAG48939.1| 1602|Homo sapiens polybromo-1 protein. 32 2.1
AF197569-1|AAG34760.1| 1582|Homo sapiens BAF180 protein. 32 2.1
AF177387-1|AAG48933.1| 1634|Homo sapiens polybromo-1 protein. 32 2.1
X52079-1|CAA36298.1| 622|Homo sapiens ITF-2 DNA binding protein... 30 8.5
M74719-1|AAA60311.1| 667|Homo sapiens SEF2-1B protein protein. 30 8.5
BC125085-1|AAI25086.1| 667|Homo sapiens transcription factor 4 ... 30 8.5
BC005342-1|AAH05342.1| 282|Homo sapiens nucleosomal binding pro... 30 8.5
AL391294-5|CAI39710.1| 201|Homo sapiens nucleosomal binding pro... 30 8.5
AL391294-3|CAI39708.1| 282|Homo sapiens nucleosomal binding pro... 30 8.5
AL391294-2|CAI39707.1| 161|Homo sapiens nucleosomal binding pro... 30 8.5
AL391294-1|CAI39709.1| 148|Homo sapiens nucleosomal binding pro... 30 8.5
AK094058-1|BAC04274.1| 225|Homo sapiens protein ( Homo sapiens ... 30 8.5
AF250330-1|AAK14063.1| 282|Homo sapiens nucleosomal binding pro... 30 8.5
AF250329-1|AAK14062.1| 282|Homo sapiens nucleosomal binding pro... 30 8.5
>BC027624-1|AAH27624.1| 519|Homo sapiens Bardet-Biedl syndrome 4
protein.
Length = 519
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 47 DVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
D D +L + + A PE N+G+ KKK+VAA++CL+RA + AP +
Sbjct: 251 DFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD 303
>BC008923-1|AAH08923.2| 461|Homo sapiens BBS4 protein protein.
Length = 461
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 47 DVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
D D +L + + A PE N+G+ KKK+VAA++CL+RA + AP +
Sbjct: 193 DFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD 245
>AY457143-1|AAS13441.1| 527|Homo sapiens Bardet-Biedl syndrome 4
splice variant 1 protein.
Length = 527
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 47 DVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
D D +L + + A PE N+G+ KKK+VAA++CL+RA + AP +
Sbjct: 259 DFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD 311
>AK075321-1|BAC11547.1| 519|Homo sapiens protein ( Homo sapiens
cDNA FLJ90840 fis, clone Y79AA1002334, weakly similar to
GLUCOSE REPRESSION MEDIATOR PROTEIN. ).
Length = 519
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 47 DVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
D D +L + + A PE N+G+ KKK+VAA++CL+RA + AP +
Sbjct: 251 DFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD 303
>AF359281-1|AAK58868.1| 519|Homo sapiens Bardet-Biedl syndrome type
4 protein.
Length = 519
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 47 DVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
D D +L + + A PE N+G+ KKK+VAA++CL+RA + AP +
Sbjct: 251 DFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFD 303
>BC129935-1|AAI29936.1| 1597|Homo sapiens PB1 protein protein.
Length = 1597
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1122 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1157
>BC129934-1|AAI29935.1| 1652|Homo sapiens PB1 protein protein.
Length = 1652
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1122 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1157
>BC115011-1|AAI15012.1| 1540|Homo sapiens PB1 protein protein.
Length = 1540
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1013 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1048
>BC115010-1|AAI15011.1| 1615|Homo sapiens PB1 protein protein.
Length = 1615
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1088 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1123
>BC115009-1|AAI15010.1| 1454|Homo sapiens PB1 protein protein.
Length = 1454
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1106 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1141
>AY281068-1|AAP34197.1| 1689|Homo sapiens polybromo-1D protein.
Length = 1689
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1107 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1142
>AF225872-1|AAG48941.1| 1582|Homo sapiens polybromo-1 protein.
Length = 1582
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1107 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1142
>AF225870-1|AAG48939.1| 1602|Homo sapiens polybromo-1 protein.
Length = 1602
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1075 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1110
>AF197569-1|AAG34760.1| 1582|Homo sapiens BAF180 protein.
Length = 1582
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1082 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1117
>AF177387-1|AAG48933.1| 1634|Homo sapiens polybromo-1 protein.
Length = 1634
Score = 31.9 bits (69), Expect = 2.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 200 GYDELYDENTEDAKDEGNKNIEANDKIDIPV-MNNNE 235
G DE +N+ED++ E N N+E +K D+PV M+N E
Sbjct: 1107 GDDEKNTDNSEDSRAEDNFNLE-KEKEDVPVEMSNGE 1142
>X52079-1|CAA36298.1| 622|Homo sapiens ITF-2 DNA binding protein
protein.
Length = 622
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKPVAGE 243
D+ DEN +D K +K ++ +DK DI + +N +D+ + E
Sbjct: 471 DDEGDENLQDTKSSEDKKLD-DDKKDIKSITSNNDDEDLTPE 511
>M74719-1|AAA60311.1| 667|Homo sapiens SEF2-1B protein protein.
Length = 667
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKPVAGE 243
D+ DEN +D K +K ++ +DK DI + +N +D+ + E
Sbjct: 516 DDEGDENLQDTKSSEDKKLD-DDKKDIKSITSNNDDEDLTPE 556
>BC125085-1|AAI25086.1| 667|Homo sapiens transcription factor 4
protein.
Length = 667
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKPVAGE 243
D+ DEN +D K +K ++ +DK DI + +N +D+ + E
Sbjct: 516 DDEGDENLQDTKSSEDKKLD-DDKKDIKSITSNNDDEDLTPE 556
>BC005342-1|AAH05342.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 75 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 131
>AL391294-5|CAI39710.1| 201|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 201
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 55 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 111
>AL391294-3|CAI39708.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 75 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 131
>AL391294-2|CAI39707.1| 161|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 161
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 65 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 121
>AL391294-1|CAI39709.1| 148|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 148
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 75 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 131
>AK094058-1|BAC04274.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ36739 fis, clone UTERU2013262, weakly similar to
AXONEME-ASSOCIATED PROTEIN MST101(2). ).
Length = 225
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 75 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 131
>AF250330-1|AAK14063.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 75 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 131
>AF250329-1|AAK14062.1| 282|Homo sapiens nucleosomal binding
protein 1 protein.
Length = 282
Score = 29.9 bits (64), Expect = 8.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNEEDK 238
D + N+KN A + P E+ +EN EDA ++G + EA + V N E+ K
Sbjct: 75 DYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEA---VAAEVKNEEEDQK 131
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.314 0.132 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,685,999
Number of Sequences: 224733
Number of extensions: 681933
Number of successful extensions: 1367
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 36
length of query: 243
length of database: 73,234,838
effective HSP length: 88
effective length of query: 155
effective length of database: 53,458,334
effective search space: 8286041770
effective search space used: 8286041770
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)
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