GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001843-TA|BGIBMGA001843-PA|IPR013026|Tetratricopeptide
region
         (243 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.83 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 76  LIAKKKFVAALTCLQRAVWAAPLNG 100
           +IA   F+  L CL    W  P NG
Sbjct: 276 IIANLNFILHLFCLLDVQWRIPFNG 300


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 179 DPHINSKNRTASLVVLPPLVLGYDELYDENTEDAKDEGNKNIEANDKIDIPVMNNNE 235
           D  IN + RT     L  +   Y    D+ T+D   E +   ++N   +  V+ N E
Sbjct: 435 DLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTE 491


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/33 (21%), Positives = 19/33 (57%)

Query: 207 ENTEDAKDEGNKNIEANDKIDIPVMNNNEEDKP 239
           E T+D  D+ + N     + + P  +++++++P
Sbjct: 83  EETDDKDDDESDNENIKSQKEFPNSSSSDDERP 115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,178
Number of Sequences: 429
Number of extensions: 1483
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 243
length of database: 140,377
effective HSP length: 56
effective length of query: 187
effective length of database: 116,353
effective search space: 21758011
effective search space used: 21758011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)