GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001843-TA|BGIBMGA001843-PA|IPR013026|Tetratricopeptide
region
         (243 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    33   0.13 
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    30   1.2  
At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containi...    30   1.6  
At1g22700.2 68414.m02837 tetratricopeptide repeat (TPR)-containi...    28   6.6  
At1g22700.1 68414.m02836 tetratricopeptide repeat (TPR)-containi...    28   6.6  

>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 46  KDVDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPL 98
           K  + S A    AL   P    A+ NLGL  +A++++  A +C ++++ A  L
Sbjct: 567 KQYEVSKAMFSKALELKPGYAPAYNNLGLVFVAERRWEEAKSCFEKSLEADSL 619


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1347

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 66  VAAHTNLGLALIAKKKFVAALTCLQRAVWAAPL 98
           VAAHT+ G  ++A+  F  A     RAV+ AP+
Sbjct: 371 VAAHTSAGKTVVAEYAFALATKHCTRAVYTAPI 403


>At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containing
           protein / U-box domain-containing protein similar to
           serologically defined colon cancer antigen 7 GB:5031963
           GI:3170178 [Homo sapiens];
          Length = 278

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 66  VAAHTNLGLALIAKKKFVAALTCLQRAV 93
           V AH  LGLAL+ KK+F   +  LQRA+
Sbjct: 78  VKAHYMLGLALLQKKEFTNGVKELQRAL 105


>At1g22700.2 68414.m02837 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain; ESTs
           gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from
           this gene
          Length = 296

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 48  VDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
           +D  +A+ + A+   P  V A  NLG A   KK+   AL   +  +   P N
Sbjct: 217 LDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNN 268


>At1g22700.1 68414.m02836 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain; ESTs
           gb|T43026, gb|R64902, gb|Z18169 and gb|N37374 come from
           this gene
          Length = 301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 48  VDASLARLKTALTAHPECVAAHTNLGLALIAKKKFVAALTCLQRAVWAAPLN 99
           +D  +A+ + A+   P  V A  NLG A   KK+   AL   +  +   P N
Sbjct: 222 LDKGIAQFEMAVKLQPGYVTAWNNLGDAYEKKKELPLALNAFEEVLLFDPNN 273


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,795,879
Number of Sequences: 28952
Number of extensions: 129903
Number of successful extensions: 320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 8
length of query: 243
length of database: 12,070,560
effective HSP length: 79
effective length of query: 164
effective length of database: 9,783,352
effective search space: 1604469728
effective search space used: 1604469728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)