Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containi... 32 1.4
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 31 1.8
At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase fa... 31 2.4
At3g23200.1 68416.m02925 expressed protein 31 3.2
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 30 4.2
At3g63190.1 68416.m07099 ribosome recycling factor, chloroplast,... 30 4.2
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 30 4.2
At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearl... 30 5.5
At3g17810.1 68416.m02271 dihydroorotate dehydrogenase family pro... 30 5.5
At3g25680.1 68416.m03196 expressed protein 29 9.7
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 29 9.7
>At5g56510.1 68418.m07052 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA-binding protein
Length = 596
Score = 31.9 bits (69), Expect = 1.4
Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 327 IYFKKSGNKLQVTFNQLMKKLPNQYLSGSALDPYNKVIIESLVDCLSKD 375
I+ +K GN +++ FN+++ Y+S +DP+ +++ L++ ++D
Sbjct: 298 IFSEKDGNDIEMIFNEII-----DYISELMMDPFGNYLVQKLLEVCNED 341
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 261 VLELKNYTKYVIGYLSKIIDHHSEMNTINVNQDQFFSMIDLIN 303
+LE+ Y+ + +KI+DHHS TI + +D +ID I+
Sbjct: 140 ILEMHTYSHCCDTWETKILDHHSSFETIVMKEDLKRRLIDDID 182
>At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam domain PF03171 2OG-Fe(II)
oxygenase superfamily
Length = 438
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 314 SGDLIKQLSKYKDIYFKKSGNKLQVTFNQLMKKLPNQYLSGSALDPYNK 362
+ +++K L Y+D++ + +KL + NQL + N LSG +NK
Sbjct: 161 TANVVKGLKLYQDVFTRPQLSKLLDSINQLREAGRNHQLSGETFVLFNK 209
>At3g23200.1 68416.m02925 expressed protein
Length = 152
Score = 30.7 bits (66), Expect = 3.2
Identities = 20/75 (26%), Positives = 28/75 (37%)
Query: 439 ILDRMTSTRRNPWLWASFVLLVSIAGLVAYDVSRAGGNFPKSTTGKLFKDLGILEHSQQA 498
ILD R+ L V L + V +S AG + T F DLG +
Sbjct: 62 ILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAEC 121
Query: 499 WQKTLSTSARGYLWL 513
W+ LS + W+
Sbjct: 122 WKYQLSVALAFLCWI 136
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 30.3 bits (65), Expect = 4.2
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 410 LQYKEVSGEALKGKKKDEVL--VKTTKICQDILDRMTSTRRNPWLWASF 456
LQ+ +S EA +KD +L V+T CQ + D +TS+R NP+ F
Sbjct: 1525 LQFAALSCEA---SRKDVLLYDVQTCSPCQKLTDTVTSSRSNPYSLVHF 1570
>At3g63190.1 68416.m07099 ribosome recycling factor, chloroplast,
putative / ribosome releasing factor, chloroplast,
putative similar to SP|P82231 Ribosome recycling factor,
chloroplast precursor (Ribosome releasing factor,
chloroplast) (RRF) (CpFrr) (RRFHCP) {Spinacia oleracea};
contains Pfam profile PF01765: ribosome recycling factor
Length = 275
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 275 LSKIIDHHSEMNTI---NVNQDQFFSMIDLINTKKNGLSKEFSGDLIKQLSKYKDIYFKK 331
LSK++ SE + N+ +D S L KK LS++ DL L K D+Y KK
Sbjct: 203 LSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKK--LSEDNVKDLSSDLQKLIDVYMKK 260
Query: 332 SGNKLQVTFNQLMK 345
+ +LMK
Sbjct: 261 IEELYKQKEKELMK 274
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 279 IDHHSEM--NTINVNQDQFFSMIDLINTKKNGLSKEFSGDLIKQ 320
+DHH +M + +++ ++ ++ D I T K GLS E +L+K+
Sbjct: 364 VDHHQDMRLDIEDMSYEELLALSDQIGTVKTGLSSEDVKELLKR 407
>At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearly
identical to acyl-activating enzyme 17 [Arabidopsis
thaliana] GI:29893266; similar to acetyl-CoA synthetase
[SP|P27095] from Methanothrix soehngenii; contains Pfam
AMP-binding enzyme domain PF00501; identical to cDNA
acyl-activating enzyme 17 (At5g23050) GI:29893265
Length = 721
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 453 WASFVLLVSIAGLVAYDVSRAGGNFPKSTTGKLFKDLGILEHSQQAWQKTLSTSARGYLW 512
W + L++ A + Y+ S G F K LG++ + WQ + STS GY W
Sbjct: 406 WLVYASLINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTS--GYDW 463
>At3g17810.1 68416.m02271 dihydroorotate dehydrogenase family
protein / dihydroorotate oxidase family protein low
similarity to SP|Q12882 Dihydropyrimidine dehydrogenase
[NADP+] precursor (EC 1.3.1.2) (DPD) (DHPDHase)
(Dihydrouracil dehydrogenase) (Dihydrothymine
dehydrogenase) {Homo sapiens}; contains Pfam profile
PF01180: Dihydroorotate dehydrogenase
Length = 426
Score = 29.9 bits (64), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 340 FNQLMKKLPNQYLSGSALDPYNKVIIESLVD 370
F +L K+ P++ L S ++ YNK E L+D
Sbjct: 145 FERLKKEYPDRILIASVMEEYNKTAWEELID 175
>At3g25680.1 68416.m03196 expressed protein
Length = 558
Score = 29.1 bits (62), Expect = 9.7
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 280 DHHSEMNTINVNQDQFFSMIDLINTKKNGLSKEFSGDLIKQLSKYKDIY 328
D +++ N N + F S +DL+N K L F ++++++S+ K Y
Sbjct: 273 DSRNDLGNSNFNPESFVSRLDLVNWKAQ-LECGFHPEIMEEISRTKVDY 320
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles
PF00612: IQ calmodulin-binding motif, PF02179: BAG
(Apoptosis regulator Bcl-2 protein) domain
Length = 1043
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 8 VVGKNKKSQNGKLKSKEDEKKALKNGPKLEDVVPHSQIKSLYAGMDV 54
V + K+ +S +++K ++NG +E S IKSL G DV
Sbjct: 266 VPSRRKRDDVEASESSNEDRKKMQNGKTVEYPFDISMIKSLIQGQDV 312
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,892
Number of Sequences: 28952
Number of extensions: 588655
Number of successful extensions: 1631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1623
Number of HSP's gapped (non-prelim): 13
length of query: 652
length of database: 12,070,560
effective HSP length: 86
effective length of query: 566
effective length of database: 9,580,688
effective search space: 5422669408
effective search space used: 5422669408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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