GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
         (652 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   1.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   2.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   2.9  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   WEVVGKNKKSQNGKLKSKEDEKKALKNGPKLEDVVPHSQIKSLYAGMDVD 55
           WE   K     +  +   +D +K  ++  K +D   H +IKS   G D+D
Sbjct: 150 WEPKNKTDDDDDALVSDSDDREKDEED--KRDDTDMHGRIKSERNGKDLD 197


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 129 SKIPIEVEDPTFTIYPATYP 148
           S+IP EVED   T +  TYP
Sbjct: 336 SQIPSEVEDKYTTYFLNTYP 355


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 251 LKVWQEIFLPVLELKNYTKYVIGYLSKIIDHHSEMNTINVNQDQFFSMIDLINTKK 306
           L +   I  P L+   Y K V+  L   I +     TI  ++  FF   +  N  K
Sbjct: 37  LVILSSIDRPYLKSYTYIKLVVSVLMDFIAYFFNFWTILFSRSDFFQQFECDNEPK 92


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,674
Number of Sequences: 317
Number of extensions: 6008
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 652
length of database: 114,650
effective HSP length: 61
effective length of query: 591
effective length of database: 95,313
effective search space: 56329983
effective search space used: 56329983
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)