Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 33 0.094
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 31 0.66
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 30 0.88
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 28 3.5
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 3.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 4.7
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 4.7
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 8.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 8.2
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 27 8.2
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 33.5 bits (73), Expect = 0.094
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 324 YKDIYFKKSGNKLQVTFNQLMKKLPNQYLSGSALDPYNKVIIESLVDCLSKDDSCNATWR 383
YK +Y +S ++ N+ +PN+YL G +KVI+ES L K D ++
Sbjct: 40 YKSLYPFESNINIRNIKNEESYDIPNEYLVGEIFPTNSKVIVESFSSPLKKLDGTMINFK 99
Query: 384 Q 384
+
Sbjct: 100 E 100
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 30.7 bits (66), Expect = 0.66
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 558 VEKTPVVIKTIEEYAPGLVDNVQSYAST 585
+E+ P+ KTI E P ++++VQS A+T
Sbjct: 273 IEECPIATKTINEEYPKIIEDVQSRANT 300
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 30.3 bits (65), Expect = 0.88
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 11 KNKKSQNGKLKSKEDEKKALKNGPKLEDVVPHSQ 44
K KK Q+G + KE +K LKN K+ + +P +
Sbjct: 7 KRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDE 40
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 279 IDHHSEMNTINVNQDQFFSMIDLINTKKNGLSKEFSGDLIKQLSKYKDIY-FKKSGNKLQ 337
++ H EM N ++F + IDLI +++ + + +L+KQL K++ + K Q
Sbjct: 334 LNEHEEMIQ-NETHERFNACIDLITERRDDRVRLATENLMKQLGNIKNVMDYVTKQRKYQ 392
Query: 338 VTFNQ 342
+ F++
Sbjct: 393 LLFDK 397
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 4 GQWEVVGKNKKSQNGKLKSKEDEKKALKNGPKLED-VVPHSQIKSLYAGMDVD 55
G+ +V NKK++N K K K+ +KK + L++ + +++ L + ++D
Sbjct: 85 GESPIVSTNKKAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKLEGLESSKNID 137
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 7 EVVGKNKKSQNGKLKSKEDEKKALKNGPKLEDVVPHSQIKSLYAGMDVD 55
E VGK+KK++ KS +D +K K G E HS ++ +G D
Sbjct: 64 EDVGKHKKTKESLEKSNDDSQKISKKGAPPEKA--HSSSEASGSGSSSD 110
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 244 LKDFTVGLKVWQEIFLPV-LELKNYTKYVIGYLSKIIDHHSEMNTINVNQDQFFSM 298
+KD+ L +W E+ +PV L +K + Y SK DH + D F +
Sbjct: 635 IKDYNKALAIWSEVRIPVELAVKELENVI--YNSKYEDHGKNLPINYFGLDHFIHL 688
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 165 QDAGKANVQLFFDGTLTALANDLS-RGLHANGHR 197
QD ++N++L DG++ L + ++ R LH++ H+
Sbjct: 367 QDNNRSNIELLKDGSVVRLRHVMTGRALHSHEHK 400
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 8.2
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 88 TIEGALEAIDVTELASIITSNK---VRFSNAPLVWLKE--VANFLNSKIPIEVEDPTFTI 142
TI+ ++ DVT NK + FS L L E NF SKI E E+PT
Sbjct: 26 TIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEPTIYN 85
Query: 143 YPATYPLSETPDELKRTL 160
P T+ + P+ ++ L
Sbjct: 86 LP-TFKKKQEPNTIEENL 102
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 97 DVTELASIITSNKVRFSNAPLVWLKEVA 124
DV + + TSNKV F AP VW+ A
Sbjct: 43 DVLLVWDLHTSNKVAFFEAPSVWIMTCA 70
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,458
Number of Sequences: 5004
Number of extensions: 119842
Number of successful extensions: 372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 10
length of query: 652
length of database: 2,362,478
effective HSP length: 77
effective length of query: 575
effective length of database: 1,977,170
effective search space: 1136872750
effective search space used: 1136872750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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