GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411...    34   0.31 
07_01_0862 - 7172083-7172931                                           32   1.6  
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924...    30   5.0  
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653...    30   6.6  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    29   8.8  

>07_01_0552 +
           4109906-4109983,4110422-4110484,4110496-4110525,
           4110567-4110621,4111046-4111143,4112259-4112417,
           4112518-4112577,4113436-4113624,4113749-4113802,
           4113959-4114045,4114149-4114881,4115282-4115373,
           4115739-4115812,4116097-4116199,4116342-4117204,
           4117649-4117724,4117861-4117972,4118092-4118168,
           4118272-4118352,4118710-4118789,4118860-4118875
          Length = 1059

 Score = 34.3 bits (75), Expect = 0.31
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 307 NGLSKEFSGDLIKQLSKYKDIYFKKS-GNKLQVTFNQLMKKLPNQYLSGSALDPYNKVII 365
           +GL+ +++ ++ + LSKY  IYF    G+ L  T + L K L + + S    +P+    I
Sbjct: 220 SGLAAQYASEVFEILSKYYPIYFTHGVGDDLDATRDDLSKALMHAFCSTPYFEPF---AI 276

Query: 366 ESLVDCLS 373
             L+D LS
Sbjct: 277 PLLLDKLS 284


>07_01_0862 - 7172083-7172931
          Length = 282

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 413 KEVSGEALKGKKKDEVLVKTTKI-CQDILDRMTSTRRNPW-LWAS 455
           +E  GE +  ++   V+VK T++ CQ++  R T  RR PW  WA+
Sbjct: 33  EEGEGEVVAARR---VVVKRTRLRCQEVERRFTGVRRRPWGRWAA 74


>01_05_0346 +
           21191542-21191783,21191988-21192072,21192159-21192422,
           21192518-21192820,21193695-21193799,21193916-21194020,
           21194613-21194712,21195614-21195933,21196183-21196359,
           21196432-21196560,21196592-21196636,21196851-21197078
          Length = 700

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 183 LANDLSRGLHANGHRLLLQMLAQDNPEFCIASLQKYGSLRNSYQNRPPIGMSLL----WA 238
           L ND+ + +H +G R+    +  + P+F +  L  +G     Y  +P     LL    W 
Sbjct: 593 LINDVMKAVHRSGWRISQFGVEVETPDFWMFKLDIFGKAIQRYIQKPDKKQLLLCLLDWM 652

Query: 239 FGQG 242
            GQG
Sbjct: 653 TGQG 656


>02_05_0670 -
           30764007-30764135,30764404-30764548,30765200-30765309,
           30765578-30765761,30765857-30765969,30766242-30766412,
           30766493-30766756,30767537-30767782
          Length = 453

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 340 FNQLMKKLPNQYLSGSALDPYNKVIIESLVD 370
           F QL K+ P++ L GS ++ YNK     L++
Sbjct: 133 FKQLKKEYPDRILIGSIMEEYNKAAWHELIE 163


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 273 GYLSKIIDHHSEMNTINVNQDQFFSMIDLINTKKNGLSKEFSGDLIKQLSKYKD 326
           G+L+ +    S +NT  +N+ Q   ++     K+ G   E   D I+++  YK+
Sbjct: 550 GFLAGVFSKKSHVNTNYINEGQTGRIVKTEERKEGGKGTEKEPDRIEKVPAYKE 603


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,957
Number of Sequences: 37544
Number of extensions: 663859
Number of successful extensions: 1605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1603
Number of HSP's gapped (non-prelim): 5
length of query: 652
length of database: 14,793,348
effective HSP length: 87
effective length of query: 565
effective length of database: 11,527,020
effective search space: 6512766300
effective search space used: 6512766300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)