GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   5e-07
SB_2113| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.8  
SB_2494| Best HMM Match : M (HMM E-Value=0.0056)                       31   3.8  
SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)                  30   6.7  

>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 53.6 bits (123), Expect = 5e-07
 Identities = 21/95 (22%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 96  IDVTELASIITSNKVRFSNAPLVWLKEVANFLNSKIP-IEVEDPTFTIYPATYPLSETPD 154
           +++ +L +++  ++  F N P +WLK++A++++  +  +   DP F   P  YP+     
Sbjct: 5   VELDQLRNVLAKDQEAFPNNPSLWLKDLASYIHLHLQNVPERDPVFEDKPKDYPMCLLKK 64

Query: 155 ELKRTLSSVLQDAGKANVQLFFDGTLTALANDLSR 189
           ++K  L + L+ + +  +++FF   +  +  ++SR
Sbjct: 65  DVKGVLMNALKKSSETTLEIFFQYCMNEMVQEMSR 99



 Score = 33.9 bits (74), Expect = 0.41
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)

Query: 480 STTGKLFKDLGILEHSQQAWQKTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKDAF 539
           S T +  ++ GI + + +A+        +G  W++ N P YY++  E   P  Q + D  
Sbjct: 218 SKTARFAQEYGIEQGTIKAYGHVKHAFDKGNSWVQENYPTYYSKFREYADPAGQYAMDKL 277

Query: 540 FIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWS 588
            +A +         + Y+ +K P   + +E     L++ +QS    A++
Sbjct: 278 TLAGQFIEEQSRPARAYLNKKVP---ELLERTIGQLINEIQSRGHKAYT 323


>SB_2113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 2  SSGQWEVVGKNKKSQNGKLKSKEDEKKALKNGPKLE 37
          S+G+WEVVGK  K +    K K  EK +  + PKL+
Sbjct: 15 SAGKWEVVGKGGKKRQHNDKKK--EKFSSADAPKLD 48


>SB_2494| Best HMM Match : M (HMM E-Value=0.0056)
          Length = 737

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 282 HSEMNTINVNQDQFFSMIDLINTKKNGLSKEFSGDLIKQLSKYKDIYFK 330
           HS+  T  V +  F   ++LIN K  G  +  S D  K L   KD Y K
Sbjct: 59  HSQSKTSTVKESAFKIAVELINEKAKGRIR-LSTDFKKMLFSAKDAYSK 106


>SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)
          Length = 387

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 293 DQFFSMIDLINTKKNGLSKEFSGDLIKQLSKYKDIYFKKSGNKLQVTFNQLMKKLPNQYL 352
           ++F  M+ LI   +N   ++F G L+  L    D        KL +  NQ+  +L   + 
Sbjct: 54  NKFNYMLYLIGLSENYYQEDFFGTLLYFLDLLPD-------TKLLIENNQIRSRLTLNFE 106

Query: 353 SGSALDPYNKVIIESLVDCLSKDDSCNATWRQLFHR 388
           S S L  +NK + E +     + D+      +LF +
Sbjct: 107 SCSILSSFNKTLYERVDSLKIEKDTIQKDLIELFKK 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,959,454
Number of Sequences: 59808
Number of extensions: 772994
Number of successful extensions: 1999
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1995
Number of HSP's gapped (non-prelim): 7
length of query: 652
length of database: 16,821,457
effective HSP length: 87
effective length of query: 565
effective length of database: 11,618,161
effective search space: 6564260965
effective search space used: 6564260965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)