GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
         (652 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L07880-1|AAA29358.1|  218|Anopheles gambiae glutathione S-transf...    27   2.1  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   6.3  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   8.3  

>L07880-1|AAA29358.1|  218|Anopheles gambiae glutathione
           S-transferase protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 304 TKKNGLSKEFSGDLIKQLSKYKDIYFKKSGNKLQ-VTFNQLMKKLPN-QYLSGSALDPYN 361
           TK N ++KE +G L+     + D+YF    + L  +T   L++  PN Q +    LD  N
Sbjct: 146 TKLNVIAKENNGHLVLGKPTWADVYFAGILDYLNYLTKTNLLENFPNLQEVVQKVLDNEN 205


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 274 YLSKIIDHHSEMNTINVNQDQFFSMIDLINTKKNGLSKE 312
           Y S +ID    MN    +Q+ F   ID++  K    + E
Sbjct: 155 YNSLLIDQSVAMNRRREDQEDFVKKIDMVKVKDTEKANE 193


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 2    SSGQWEVVGKNKKSQNGKLKSKEDEKKALKNGPKLE---DVVPHSQIK 46
            SS + E+V   K+   GK+K  E E+       KL+   D +PH Q++
Sbjct: 987  SSIKKEIVALQKREAEGKMKRLEFEQILQTIETKLQETKDTLPHWQLQ 1034


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,785
Number of Sequences: 2123
Number of extensions: 23078
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 3
length of query: 652
length of database: 516,269
effective HSP length: 68
effective length of query: 584
effective length of database: 371,905
effective search space: 217192520
effective search space used: 217192520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)