GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001842-TA|BGIBMGA001842-PA|undefined
         (652 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-1|CAB05543.1|  733|Caenorhabditis elegans Hypothetical pr...    36   0.090
AF016513-1|AAB69446.1|  733|Caenorhabditis elegans Ce-LEA protein.     36   0.090
L00665-1|AAA28148.1|  537|Caenorhabditis elegans protein ( Caeno...    33   0.84 
AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical ...    31   3.4  
AF068718-3|AAO21430.1|   82|Caenorhabditis elegans Cystatin-like...    31   3.4  
Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical p...    30   5.9  
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    29   7.8  

>Z83113-1|CAB05543.1|  733|Caenorhabditis elegans Hypothetical
           protein K08H10.1 protein.
          Length = 733

 Score = 35.9 bits (79), Expect = 0.090
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 535 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 594
           +KD      +KAG       D V EK   +  + + ++    DNV++ AS A++  K  +
Sbjct: 550 AKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKA 609

Query: 595 SDYYQITTDYL-VTKVFVGDWAPEVLQNKTQSALNMTKSQVS 635
           SD +  T D     K   GD A +  ++K  +A + TK + S
Sbjct: 610 SDAWDKTKDKAGEAKDKAGD-AWDNTKDKAGNAWDSTKDKAS 650



 Score = 31.1 bits (67), Expect = 2.6
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 535 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 594
           +KD      +K G       D V EK   V  + + ++    DNV++ A+ A++  K  +
Sbjct: 248 AKDKTKSFTEKVGDKISGAYDSVKEKASDVADSFKAHSTDSKDNVENKAADAYNTAKDKA 307

Query: 595 SDYYQITTDYL-VTKVFVGDWAPEVLQNKTQSALNMTKSQ 633
           SD +  T D     K  +GD A +  ++K   A + TK +
Sbjct: 308 SDAWDKTKDKAGEAKDKMGD-AWDTTKDKAGDAWDTTKDK 346



 Score = 31.1 bits (67), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 535 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 594
           +KD    A  K G       D V EK   +  + + ++    DNV++ A+ A++  K  +
Sbjct: 437 AKDKTAEAAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKA 496

Query: 595 SDYYQITTD 603
           SD +  T D
Sbjct: 497 SDAWDKTKD 505


>AF016513-1|AAB69446.1|  733|Caenorhabditis elegans Ce-LEA protein.
          Length = 733

 Score = 35.9 bits (79), Expect = 0.090
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 535 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 594
           +KD      +KAG       D V EK   +  + + ++    DNV++ AS A++  K  +
Sbjct: 550 AKDKSKSLTEKAGDAISGAYDSVKEKASDIADSFKAHSTNSKDNVENKASDAYNSAKDKA 609

Query: 595 SDYYQITTDYL-VTKVFVGDWAPEVLQNKTQSALNMTKSQVS 635
           SD +  T D     K   GD A +  ++K  +A + TK + S
Sbjct: 610 SDAWDKTKDKAGEAKDKAGD-AWDNTKDKAGNAWDSTKDKAS 650



 Score = 31.1 bits (67), Expect = 2.6
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 535 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 594
           +KD      +K G       D V EK   V  + + ++    DNV++ A+ A++  K  +
Sbjct: 248 AKDKTKSFTEKVGDKISGAYDSVKEKASDVADSFKAHSTDSKDNVENKAADAYNTAKDKA 307

Query: 595 SDYYQITTDYL-VTKVFVGDWAPEVLQNKTQSALNMTKSQ 633
           SD +  T D     K  +GD A +  ++K   A + TK +
Sbjct: 308 SDAWDKTKDKAGEAKDKMGD-AWDTTKDKAGDAWDTTKDK 346



 Score = 31.1 bits (67), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 535 SKDAFFIALKKAGILYGNVQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYS 594
           +KD    A  K G       D V EK   +  + + ++    DNV++ A+ A++  K  +
Sbjct: 437 AKDKTAEAAGKVGDSISGAYDTVKEKASDIADSFKAHSTDSKDNVENKAADAYNSAKDKA 496

Query: 595 SDYYQITTD 603
           SD +  T D
Sbjct: 497 SDAWDKTKD 505


>L00665-1|AAA28148.1|  537|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc4, complete
           cds. ).
          Length = 537

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 553 VQDYVVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSGL-KKYSSDYYQITTDYLVTK 608
           +++ V     VVI+ I E+  G++  +  Y +  W  L KK+++   +  TDY++ +
Sbjct: 385 IKNLVPNGHDVVIRNIPEHTTGMIQPLDVYWNAPWKSLIKKFTAYALRTQTDYVIAQ 441


>AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical
           protein VF36H2L.1 protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 499 WQKTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKDAFFIALKKA 546
           W  +L  S+  +L L T  P  +  ++ +C    +LS+ A+F+ LKKA
Sbjct: 42  WLVSLLFSSLAWLGLSTVLPDTFLLSLTVCIIAQELSRVAYFMLLKKA 89


>AF068718-3|AAO21430.1|   82|Caenorhabditis elegans Cystatin-like
           protease inhibitorprotein 1, isoform b protein.
          Length = 82

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 481 TTGKLFKDLGILEHSQQAWQKTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKDAFF 540
           T G + +D    E+S +AW+     + +       N P YYA  +++C PY + ++D   
Sbjct: 23  TGGSVEQDASQKEYSDKAWKAVKGINDQA----SNNGPYYYAP-IKVCDPYERGAEDRTA 77

Query: 541 IA 542
           +A
Sbjct: 78  LA 79


>Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical
           protein R07B1.8 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 12  NKKSQNGKLKSKEDEKKALKNGPKL-EDVVPHSQIK 46
           NKK+ N   KS + EKK  K GP++ E+VV    +K
Sbjct: 352 NKKNNNDVEKSTQIEKKPEKQGPEIQEEVVEMETVK 387


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 259 LPVLELKNYTKYVIGYLSKIIDHHSEMNTINVNQD--QFFSMIDLINTKKNGLSKEFSGD 316
           L  L+ +N T   I +    +   SE +++  + +  +FF+  ++ N K  GLSKEF   
Sbjct: 375 LETLKSENLTSCEIDFYPGDVLLMSESSSLKWSNEKSEFFNFHEICNPKIEGLSKEFKRL 434

Query: 317 LIK 319
           L+K
Sbjct: 435 LVK 437


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,380
Number of Sequences: 27539
Number of extensions: 612016
Number of successful extensions: 1919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1904
Number of HSP's gapped (non-prelim): 17
length of query: 652
length of database: 12,573,161
effective HSP length: 86
effective length of query: 566
effective length of database: 10,204,807
effective search space: 5775920762
effective search space used: 5775920762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)