GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001840-TA|BGIBMGA001840-PA|IPR005055|Insect
pheromone-binding protein A10/OS-D
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    24   2.2  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    24   2.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    24   2.9  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    23   6.6  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    22   8.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    22   8.7  

>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 31  LIDSEPGYWDRLVDMYDPKRVYTGKYE 57
           L  ++ G  DR+   YDP  V+  KYE
Sbjct: 172 LSGNDNGQSDRVTPAYDPAVVFECKYE 198


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 19  AQRKGIRRVIKHLIDSEPGYWDRLVDMYDPKRVYTGKYEKEL 60
           AQ   ++ V +H+I S P  W+      D   V+  K E+E+
Sbjct: 115 AQDNILKFVERHIITSSPIEWNNEYKTIDGTDVHVIKKEEEI 156


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 5   ITDALQTGCT--KCTGAQRKGIRRVIKHLIDSE 35
           I D  QTG +   C+GA + G  R+I++ I+ E
Sbjct: 364 IIDDDQTGSSIITCSGAYKDGTLRIIRNSINIE 396


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 235

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 21 RKGIRRVIKHLIDSEPGYWDRLVDMYDPKRVY 52
          R G R +    +D E  +WD       P+RVY
Sbjct: 6  RNGFRLLKLSQMDFERAWWDMANLFRAPRRVY 37


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 15  KCTGAQRKGIRRVIKHLIDSEPGYWDRLVD 44
           KCT   R  I  + ++   ++  Y+DRL D
Sbjct: 183 KCTVKHRSQIENLDEYKSQAKSYYFDRLFD 212


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 21  RKGIRRVIKHLIDSEPGYWDRLVD 44
           RK I+  I+ +IDSE   WD  VD
Sbjct: 889 RKSIK--IRKIIDSEVTEWDVSVD 910


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,026
Number of Sequences: 5004
Number of extensions: 9072
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)